HsaINT0108643 @ hg38
Intron Retention
Gene
ENSG00000136286 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr7:44962666-44963124:-
Coord C1 exon
chr7:44962970-44963124
Coord A exon
chr7:44962896-44962969
Coord C2 exon
chr7:44962666-44962895
Length
74 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GACCCCTCCTCCTGCCGCAGGGA
3' ss Score
8.82
Exon sequences
Seq C1 exon
GTGACGGGGCTGAGCGTGACCAGCGGAGGAGACCAGCTGGTGGTGCTGCACGCCCGCGGCCAGGACGACCTCGTGGTGTGCCTGCACCGCTCCCGGCCGCCATTGGACAACCGCGTTGGGGAGCTGGTGGGCGTGCTGGCCGCACACTGCCAGGG
Seq A exon
GTGAGTGCAGGCTGGGCGGTAGCGGGCACGAAGCCCCGGCCGCGTGGCCGCCCTGACCCCTCCTCCTGCCGCAG
Seq C2 exon
GGAGGGCCGCACCCTGGAGGTTCGCGTCTCCGACTGCATCCCACTAAGCCATCGCGGGGTCCGGCGCCTCATCTCCGTGGAGCCCAGGCCGGAGCAGCCAGAGCCCGATTTCCGCTGCGCTCGCGGCTCCTTCACCCTGCTCTGGCCCAGCCGCTGAGCGCCCGCACCCGCCGCACCCCGAGGCCGCCAATTGTCCGCCCCGCCAGCGCTGCAAATAAACCTTCTGAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136286:ENST00000258787:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(25.0=100)
A:
NA
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAGGAGACCAGCTG
R:
TTAGTGGGATGCAGTCGGAGA
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development