RnoINT0097150 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86781202-86781756:-
Coord C1 exon
chr14:86781602-86781756
Coord A exon
chr14:86781529-86781601
Coord C2 exon
chr14:86781202-86781528
Length
73 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTCTAATCTTCCTGTTGCAGGGA
3' ss Score
9.12
Exon sequences
Seq C1 exon
GTGACAGGGCTGAGTGTGACCAGTGGACGGGACCAGCTGGTGGTGCTACACGCCCAAGGCCATGATGATCTTGTAGTGTGTCTACACCGTTCCCAGCCACCCCTAGACAATCGAATTGGGGAGCTGGTGGGCATGCTGGTTTCACACTGCCAGGG
Seq A exon
GTGAGTCTGGGGTCATTTGGGACGTGGGCAGACAGAGCTCTACCACTCTGACCCTCTAATCTTCCTGTTGCAG
Seq C2 exon
GGAGGGACGAACCCTGGAGATCCGTGTCTCTGACTGTATCCCACTGAGCCAGCGTGGTGCCCGGCGCCTCATTTCCGTAGAGCCCAGGCCAGAGCAGACTGAGCCAGATTTCCAATGCAGCCGCAGTACCTTTACCCTCCTCTGGCCAAGCCACTGAGCAAGCTCAAGCCAGCCTAGCCTGGTCTCCGCACAGTTCTAGACACCTGGTCTTGACCGTACTAAAGGCTAGGATTTGTCCACCTTTATATAGAATGCCACAAAATAAAGATGCTATATTTGTACCCAGTGTGGCTGTCATTGCCTTGGCCAATGTTACCTTACCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(25.0=100)
A:
NA
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACCCCTAGACAATCGAA
R:
GGCTGCATTGGAAATCTGGCT
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]