BtaINT0098051 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77332630-77333095:+
Coord C1 exon
chr4:77332630-77332784
Coord A exon
chr4:77332785-77332865
Coord C2 exon
chr4:77332866-77333095
Length
81 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCCTGACCTCCTTCCTTCAGGGA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GTGACCGGGCTGAGCGTGACCAGCGGGCGGGACCAGCTGGTGGTGCTGCATGCGCGGGGCTATGACGACCTGGTGGTGTGTCTGCACCGCTCCCAGCCGCCACTGGATAACCGCATCGGGGAGCTGGTGGGGGTGCTGGCTGCGCACTGCCAGGG
Seq A exon
GTGAGTCCCTGGGCACGGGCAGGGCAGCGGCTGCCTATCTGAGGGGCCTGGCCCATCCTGACCCTGACCTCCTTCCTTCAG
Seq C2 exon
GGAGGGACGGGCCCTGGAGGTCCGAGTGTCCGATTGCATCCCCCTGACCCAGCGCGGGGCCCGGCGCCTGGTATCCGTGGAGCCCAGATCGGAGCAGCCAGAGCCGGATTTCCGCTGCAGCCGTGGCGCCTTCACCCTCCTGTGGCCGAGCTGCTGAGAGGTTCTCCACCTGCACCCACACCAGTGACAGATCGCAGTCTCGCTGTGCAATAAAGGATGCTGAGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377:ENSBTAT00000008366:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(25.0=100)
A:
NA
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGGTGTGTCTGCAC
R:
GATCTGGGCTCCACGGATACC
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]