MmuINT0104285 @ mm10
Intron Retention
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6506548-6507061:-
Coord C1 exon
chr11:6506907-6507061
Coord A exon
chr11:6506833-6506906
Coord C2 exon
chr11:6506548-6506832
Length
74 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CGCTGCCCTTCCTGTTGCAGAGA
3' ss Score
11.26
Exon sequences
Seq C1 exon
GTGACAGGGCTGAGTGTGACCAGTGGAAGAGATCAGCTGGTGGTGTTACATGCCCAAGGCTATGATGATCTTGTAGTGTGTCTACACCGTTCCCAACCACCACTGGACAATCGAATTGGGGAGCTGGTGGGCATGCTGGCTGCACACTGCCAGGG
Seq A exon
GTGAGTCTGGGGTCATTCGGGGATGTAAGCAAACAGAGCTCTACCACTCTGACCCGCTGCCCTTCCTGTTGCAG
Seq C2 exon
AGAGGGACGAACTCTGGAGGTCCGTGTCTCTGACTGCATCCCACTGAGCCAGCGTGGTGCCCGGCGCCTCATTTCTGTGGAGCCCAGGCCAGAGCAGCCTGAGCCAGATTTCCAAAGCAGCCGTAGCACCTTTACCCTCCTCTGGCCAAGCCACTGAGCAAGGCCAAACCAGTTTAACCTGGTTTCCACGCTGTTCTAAATACCTGGTCTTGACTGCACTAAAGGCCAGGACTTGTCTACCCTTACATGGAACATTGCAAAATAAAGATGTTATATTTGTTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437:ENSMUST00000003459:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.346
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(25.0=100)
A:
NA
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGTGTGACCAGTGGAAG
R:
AGACACGGACCTCCAGAGTTC
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types