GgaINT1018682 @ galGal4
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4040413-4040693:+
Coord C1 exon
chr2:4040413-4040508
Coord A exon
chr2:4040509-4040576
Coord C2 exon
chr2:4040577-4040693
Length
68 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CCCTCACCTGCCTCCCCCAGGCT
3' ss Score
8.85
Exon sequences
Seq C1 exon
CTGCTTCTGGGAGCCCCTGATGCACTGCTGGCCTCACTGCACCTCCAGCGGGACCCCACTGCATACTGCTACACCCAGCAGGGCACCCAGGGAAGC
Seq A exon
GTGAGTGGGGCAGGGGTGGCTGGGGGGGTGGGGTCCTGGGGGTCCCGTCCCTCACCTGCCTCCCCCAG
Seq C2 exon
GCTGGCGGTGACGATGCGCGTGGCTACCGGGCAGTGGAGGAGGCAATGGCAGTCATTGGCTTCACCCCAGAGGAGGTGGGCGCTGTGCAACGCATCCTGGCGGCCATCCTGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCTGGGAGCCCCT
R:
CTCTGGGGTGAAGCCAATGAC
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]