RnoINT0097154 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86792223-86792668:-
Coord C1 exon
chr14:86792558-86792668
Coord A exon
chr14:86792340-86792557
Coord C2 exon
chr14:86792223-86792339
Length
218 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
GTAAACGCCTTCTCCCCTAGGCC
3' ss Score
9.18
Exon sequences
Seq C1 exon
TTGCTTCGGGGCAGCGAGGACCAAGAGCTGCAAGAGCTGCATCTGGAGAGAAATCCCGCTGTGTATAATTTCACGCGTCAGGGAGCTGGGCTCAACATGGGTGTGCACAAT
Seq A exon
GTGAGGGCAAGGGGTACAGGTCTCAGCCAGACTCAGGGACTGGACAGTGATTGGCTCGGGCCAGATACAGGATGAACAAGTACCAGGGGTGGAAGAACAGGGATTCGTGGAGGAGAAGGGATGGGGCGAGCAGGTGCCAGAGATGGAGATCCGAGGTCTGTGAAGGGCAGGTTTCCTGGGTCCACGTTAGCCTGGGTGGTAAACGCCTTCTCCCCTAG
Seq C2 exon
GCCTTGGGTAGTGATGAGAAGAGCCACCAAGGAGTGATGGAGGCCATGAAGATTATCGGCTTCAGTCCCGAGGAGGTAGAATCCATCCATCGTATCCTAGCCGCCATATTGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCGAGGACCAAGAG
R:
CAGGTGCAATATGGCGGCTAG
Band lengths:
220-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]