MmuINT0104289 @ mm9
Intron Retention
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6416751-6417200:-
Coord C1 exon
chr11:6417090-6417200
Coord A exon
chr11:6416868-6417089
Coord C2 exon
chr11:6416751-6416867
Length
222 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
GTAAACACCTTCCACCCTAGGCC
3' ss Score
6.96
Exon sequences
Seq C1 exon
TTGCTTCGAGGCAGTGAGGACCAAGAGCTGCAAGGACTGCATCTGGAAAGAAATCCTGCTGTGTATAATTTCACGCGTCAGGGAGCTGGGCTCAACATGGGTGTGCACAAT
Seq A exon
GTGAGGGCAAGGGGTACGGGTCTGTCAGACTCAGGGAGTGGACAGTGATTAGCTTAGGCCAGATACAGGATGAGCAAGTGCCAGGGATGGAAGAATTGGGATTCGTGGAGGAGAAGGGGTGGGGTGAGCAGGTGCCAGCAATGGAGATCTGAGATTAGGTTAGGTTAAGGGCAGACTTCCAGGGCCTATGTTAGCCTGGATGGTAAACACCTTCCACCCTAG
Seq C2 exon
GCCTTGGACAGTGATGAGAAGAGCCACCAAGGAGTGATGGAGGCCATGAGGATCATCGGCTTCAGTCCTGACGAGGTGGAGTCCATCCATCGCATCCTTGCCGCCATATTACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-Myo1g:NM_178440:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTCGAGGCAGTGAGGA
R:
CAGGTGTAATATGGCGGCAAG
Band lengths:
228-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: