DreINT0014977 @ danRer10
Intron Retention
Gene
ENSDARG00000036104 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr19:25152817-25153211:-
Coord C1 exon
chr19:25153113-25153211
Coord A exon
chr19:25152934-25153112
Coord C2 exon
chr19:25152817-25152933
Length
179 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TGCAAAAATTATCCTCAAAGGCA
3' ss Score
3.28
Exon sequences
Seq C1 exon
TTGTTACGAGGAGGGTCTGATGATTTGCTCAAGTCCTTATATCTACAGAGAGATCCTGCTGAATATACCTACACCAGTCAAGGAGCTTCTGTCACACTT
Seq A exon
GTAAGTACTTATCAAAAACTACAGTAGTACAGTAGTGTAGTTTATACATGTTTTCAAGACTAAACGTATAGCTTAGTGCTCTTTTTAAAACCAATATTAGTGATGCAAAATGCACAAAATGTTGTTTTTATGTCTTAGTCATTCTTTTTTTCTCCCCTTTGCAAAAATTATCCTCAAAG
Seq C2 exon
GCATCCAATAATGACTCCCAATGTCATAAAGCTGTGATGGCAGCATTAAAGGTGATTGGCTTTACTGCTGAAGAAATCAGCTCCATCTACAAGACCCTCAGTACCATCCTACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036104:ENSDART00000142774:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACGAGGAGGGTCTGATGA
R:
GGTGTAGGATGGTACTGAGGGT
Band lengths:
213-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]