HsaINT0108647 @ hg19
Intron Retention
Gene
ENSG00000136286 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:13880]
Coordinates
chr7:45011272-45011824:-
Coord C1 exon
chr7:45011714-45011824
Coord A exon
chr7:45011389-45011713
Coord C2 exon
chr7:45011272-45011388
Length
325 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
ATGAATCCCTTCTACCCTAGGCC
3' ss Score
8.57
Exon sequences
Seq C1 exon
TTGCTGAGAGGCAGTGAGGACAAGCAGCTGCATGAACTGCACTTGGAGAGAAACCCTGCTGTATACAATTTCACACACCAGGGAGCAGGACTCAACATGACTGTGCACAGT
Seq A exon
GTGAGTGTGAGGGGCACCAAGGGCTCAAACTGGGCTCAGTGTCAGGGCCTGAGTGTGGTGGTAGGGAATGGGCAGCACTCAGCACAGGCCAGGGTGAAGTGAACTGTTTGCGTGAGTGGGGAGGGTGCTCGGGGTGGAGTGAAAATGGCTGATGGAGGGGACAGAGTGCAGGGGTGAGCAGGTGCTTAGGCTGGAGTAATCAGGTTCAGGAAGGGGACAGGGGACAGGGGTGAGCAGGTGCCTAGGATGGAGGAATCAAGCCTCAAGGGAGACAGGTGTCCTGGGCCCAGTGTGGCTTTGGAGTGATGAATCCCTTCTACCCTAG
Seq C2 exon
GCCTTGGACAGTGATGAGCAGAGCCACCAGGCAGTGACCGAGGCCATGAGGGTCATCGGCTTCAGTCCTGAAGAGGTGGAGTCTGTGCATCGCATCCTGGCTGCCATATTGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136286-MYO1G:NM_033054:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGGCAGTGAGGACAAG
R:
GTGCAATATGGCAGCCAGGAT
Band lengths:
222-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)