GgaINT1018798 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8361593-8363059:+
Coord C1 exon
chr10:8361593-8361875
Coord A exon
chr10:8361876-8362884
Coord C2 exon
chr10:8362885-8363059
Length
1009 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTGTTTGTGGTATAACCTAGATG
3' ss Score
6.23
Exon sequences
Seq C1 exon
TACCAGGTATGCTGGAATATGAAAGTCTCCAAGGAATTTCTGGCTTGAAACCTACAGGGTTCCGTAAACGTTCCTCTAGTATAGATGACACGGATACGTACACAATGACATCCATCCTGCAGCAACTCAGCTATTTTTATAGTACTATGTGCCAGAATGGCCTGGACCCTGAGCTTCTCAAGCAGGCAGTGAAGCAGCTTTTCTTTCTCATTGGAGCGGTCACCCTCAATAGCCTCTTCCTCCGCAAGGACATGTGCTCTTGTAGGAAAGGAATGCAGATAAG
Seq A exon
GTAAAGCCAGGAAGCTTTCAGCAAGCAGTTGCTTCAGAATGAATTCTTAATGTTTTTTGTAACCTAGTCCTTTATCTCTTTGTCACTGGATCTCCTGTGACTGTTCTGTTGGAAGCAGCCAACTGTTTTTCTCTCTTTTGGAAAAAAATAGATCTTTGCCTTATCAGCTGAGCTTTCTGTGTTTAGCATGCTACAGACTGTACTTTCCATTGAAGCACCGAAGGAGAAAACATCAGCAGAGAGCTCAAAGTCAGTCCTATGTTTAGCATTCTTCCTATGCTTGTTGGCTCATGATGGTGACTAGTATTCTTAGTAGAGTAAGCAGGTACAGCATCTCGTCTGGCAGACAGACAAAGGCAGACTTACGTTGTTTATGCTCCGTCATGAGAAAAGAAAGCACTGAGACAGAGCCATTTGATGGCCCAGGTCAGGCATCATCCATCTTATGGTCACGAAGAGCATACCTTCCAAACAGCTTTTGCAAAATACCCATAGTTCTTCTCCATTAGACAGTCTGCAGACTACGATGAAAGAAAATCAGTCAAATTTTGACCCATTCCAAAATATTACTAGAAGAAATCTTCTTTAACCTTTATATCTTAGCCCGATTAGTAATGTTTAAAGATTACTTTACAACTAAGCTTATACAGTAGATTACAATAATATTTTTAACATATACAGTGCTACGATAGAGTTGCCAGTGCTAATAGGTACTGGTATTCTCCTGATTCTTCTGTAACAGCTAAACTAGTAACTTGCTTTCTGTTGGGCACCCTTTAAGAAATGAAGTGAATAAATAAAAAGGATTAAAGTATACAAGAGATGAAACTTAAAAACCAGCAGACTATTGTTTGATGTTTATGATGTACTGGTATGGTGTTTTTTATTACTTAAACTCTACAATATAAACACTGCATTAGAGGAACATTACTTCTAAAGAAGACTTCAATGTAATTTGTTTGACAGAGGGAACCTGACATTTCTGTTGTCTGTTTGTGGTATAACCTAG
Seq C2 exon
ATGTAATATCAGCTATTTGGAAGAATGGCTTAAAGACAAGAATCTTCAAAGCAGCAATGCCAAAGAAACTTTAGAGCCTCTGTCTCAAGCAGCCTGGCTCCTTCAGGTCAAAAAGATCACCGATGATGATGCCAAAGAAATATGTGAACACTGCACATCGCTTTCCACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATCCATCCTGCAGCAAC
R:
CTGCACAGTGGAAAGCGATGT
Band lengths:
353-1362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]