MmuINT0104499 @ mm9
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75145211-75148787:+
Coord C1 exon
chr9:75145211-75145493
Coord A exon
chr9:75145494-75148612
Coord C2 exon
chr9:75148613-75148787
Length
3119 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GTCCCTCTGGCTTTCTCTAGGTG
3' ss Score
11.84
Exon sequences
Seq C1 exon
TGCCAGGCATGCTGGAGTATGAGAGCCTGCAGGGCATTTCCGGCCTGAAGCCCACTGGTTTCCGGAAGCGCTCATCCAGCATCGACGACACAGATGCCTACACCATGACGTCCATCCTGCAGCAGCTGAGCTACTTCTACAGCACCATGTGTCAGAACGGCCTGGACCCCGAGATTGTGAGGCAGGCGGTCAAGCAGTTGTTCTACCTGGTCGGGGCGGTGACCCTCAACAGCCTCCTCCTGCGCAAGGACATGTGCTCCTGCAGGAAAGGCATGCAGATCAG
Seq A exon
GTAAAACCCACATGCCATGCCCCACCTCCCAGAGGCCAGCTGGAAGAAATGCTCCCGATGCTGGACCCTTCCTGCCTCCCTACGCCACCCCCCACTCCATCCCCCGGATACATGCAAGGCTCCACTGAGCCCTCTGAGCGCTGGTTTGCTGGTGGCTGCACACCAACGCGTTCACACTCTACTGCCAACGTGATGCTTTAGTCTATGAGAACGATATTAGTATGTCATGGATTGTGAGTTTCCAAGGTTATCGTATTCTTAACTAGTATCAATCACTTGCTTGGTGACTGGCCCAGTTGGGTAGAGAATCCAGAAAATTGCCGAGAGGCTCAACACAGCTAAGTAGTAGACTAAGACACCAATCATGTCACAGCAGGTGAGGACAGATGTACCGAGGAAGCCAGAGAGATGAGTACTAGATGACAAGCTTGAGAAAGAGGAACATTGCAGGCATGAGATAGATGAAGACAAAGGAGTGGTCCATCCCCGGCTCTGCCTGGAGTACAGTAATCTGTTGTTAGGACCCCGAGGGACTGCCATAGAGAGGTGGGTTCAATCCAGACCAAGAGGGTTCAGAATGCAGTGCAAGCAGATGGGGTCCATCTTGGAGGCATGACAACACAGTTGTAAGGACCATGGACCCCATCTAAATTGAGGACCCATGGAGCCTGTGACTAAGACCACATACCATAGGAAGATATTTAGGATATGTGCGTATATTCAGGCAGTTGATACCTATGTGTGCTCCGAGAGCTTGGGAAATGACCATAGGTGTGTGCTATCATCTGATTGAGGTGACAAGGTATATTAAGCCTAGAAATCCCTGCAAAGAATCCATCATGCATTCTTAGCACTCATGAAAGTTGGATTTCCCATAAACCATATGGCGCCATATTGTAGGTTTTAGATGCCAAAGGACTTTGCAAATCCTTTGCTTTTCATTGAGAACTGAAAAAATAAACTGCCCATTGCACATCTAAGCAGTGAGCCTGAACGAGCCTCAACTGAGACAAAGCAGGGGACTGGGGAGGTGGCTCAGCTGGTAGAGTGCCTGCCTAGCATATACAAAGGTTCCATCCCCACACCACACCTTGTTCACGACTGGCTTCGATCCTACAGCCCCACACCTTGCTCACACCTGGGATCCTACAGCCCCACACCTTGCTCACACCTGGGATCCTACAGCCCCACACCTTGCTCACACCTGGGATCCTACAGCCCCACACCTTGCTCACACCTGGGATCCTACAGCCCCACACCTTGCTCACACCTGGGATCCTACAGCCCCACACCTTACTCACACCTGGGATCCTACAGCCCCACACCTTACTCACACCTGGGATCCTACAGCCCCACACCTTGCTCACACCTGGGATCCTACAGCCCCACACCTTGCTCACACCTGGGATCCTACAGCCCCACACCTTGCTCACACCTGGGATCCTGCTTGTCACCTTTCTGTAGTTTTTAGTTTAATTCCATTGTGGCCATAGATCATTACTTTGTCAGTTAAACACTTAGAAATAGGAATCAGAATGATGTTTCCCAGAAACTCTGATAATAGATTACAACATCAAATCTCTGGGGGAACTGGCCTTCTTGTTGTTACATAATGTCCTGCTATCCCTTCCTGGAAATTTTCTTTTCTTTGAAGTTTTTTAAAAAGCCACTCCAGATTTATTTGATTAATATTTTCATAACATATTTTATTTACTTTTAACATATTTATGGCATATATGAGGTGAATTTCTTGTAGATAACATATACAAGTATCTTGGTGTTAAGACTTTGTTTTTAAATTACTTGTATGGGGGGTGGAACTATGTACATGTCAGTGCAATACTCATAGAGGCCATAAGAGGGCATCAGAGTCCTCTAGAGCAGTGGTTCTCAACCTGCGGGTCATGACCCCCATAGGGACAACATATCAGATAACCTGCATATCACATATTTACATCTGACTCATAACTATAGCAAAGTTTCAGTTCTGAAGTCTCAATGAGATAATTTTTTTAAAGTATTTATTTTATTTTTTATGTGCATTGGTGTTTCGCTGCATGTCTGTTTGTATGAGTGTGTTAGATCTTGGAGTTATAAACAGTTGTGAGCTCCCATGTGGGTGCTGGGAACTGAGCCCAGGTCCTCTGGAAGTACAGTCAATGCTTATGACCACTGAGCCACCTGTCCAACCCTGCAATGAGATAGTTTTGTGGTTGGGATCACTCTAGCGTGAAGCACTGCGTTAAAAGGTCACAGCATTAGGAAAGTTGAAACCGTGGCTCTAAAGCTGGAGTTACAGGCAATTGTGAGGGGCCTGGTGTGGGTGCTGGGAACCAAACAAAGGTAGGTCCTCTGTAAAACTGCTGAGCCCTTTCTCCAGCCCACGTCGTGTTTTGTTTTTTAATCCAGTCTGACCATATGTTCTTCTTAATTGAAGAATTTAGACCATTTTAATTTAATGTAATTTGTGATATATTTAGGTTTGTTTCCCGTGTCATTTTCTTTCTTGTGATTTATTTTCATTCTTTTTCAAACATGTATATGTTTGTGTCAGGGTAAGTGTATGTGAGTATGGTGCAGAGGCAGTGATCCCCCTGCAGTTGGAGTTCGAGGCCATTGTGAGCAGCCCCCCTACTTGCTGGGAACTGAACTGAGGTCCCCTCTTCGAGAGTGGGAAGTTCTCTCAACCCCTGAGCCATCTCTCTCTCCAGCGCCTGCCATACTATTTTCCATGTGAACCTCCTGGGTTTTGTTTCTCTGGTTTCCTCTTTCTGCCTTTGTGTGTGTGTGTGTGTGTGTCTAGAATATTTTGTAATCTTTCTAATGTATTATGTTGCTTTTTAGTGGGAATGGAAGCACACATATTTATGTATTCACAACACATTTAGAATCAACATCACCATGCCAACATTTTCCCACCTCATAGGACTTTTGACACTGTCCTATTATGTCACTGCTGTCTTACAGAGAATGGTGGTGATCGGAAAAGCTCTCTCCTGGTCCCTCCCCTCCTATTTTAAGTAAGAGACTGCTGGGCTTTGCTTGTAAACATGCAGTGAGCTCTGGGGCACGCTGAGGGGTTTGACACTGTACTGAAAGGTCCCTCTGGCTTTCTCTAG
Seq C2 exon
GTGCAACATCAGCTTCTTGGAAGAATGGCTAAAAGATAAGAATGTGCAGAGTAGCTTAGCCAAGGAGACACTGGAGCCCCTCTCTCAGGCAGCCTGGTTGCTGCAGGTGAAGAAGACCACAGACAGTGATGCCAAGGAGATCGCCCAGTGTTGCACTTCCCTGTCTGCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-Myo5c:NM_001081322:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: