RnoINT0097323 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82240263-82244499:+
Coord C1 exon
chr8:82240263-82240545
Coord A exon
chr8:82240546-82244324
Coord C2 exon
chr8:82244325-82244499
Length
3779 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTCCTCTGGCTTTCCCCAGGTG
3' ss Score
12.49
Exon sequences
Seq C1 exon
TGCCAGGCATGCTGGAGTACGAGAGTCTGCAGGGCATTTCCGGTCTGAAGCCCACTGGTTTCCGGAAGCGCTCATCCAGCATCGATGACACCGATGCCTATACCATGACGTCCATCCTGCAGCAGCTGAGTTACTTCTACAGCACCATGTGTCAGAACGGCCTGGACCCTGAGATTGTGAGGCAGGCGGTCAAGCAGCTGTTCTACCTGATCGGGGCGGTGACCCTCAACAGCCTCCTCCTTCGAAAGGACATGTGCTCCTGCAGGAAAGGGATGCAGATCAG
Seq A exon
GTAAAACCCTTATGCTGTGCTTCCCCTCCCACAGGCCAGCTGGAAGAAATGCTGCTGATGCTGGGCCCTCCCTGCCTGCCCCTGGACAAGGCTCCACTGAGCCCCCTGAGTGTTGGCCTGTTGGTGGCTGCACACCAACGCCTTCACACTGAACTGCCAACTCGACGCTTGAGCCTATGAGAACGTCATTAGTATGTTGTGGAGTCTGAGTTTCCAAGGCCATCAGACACTTAACCAGTATCAACCGCCTGCTTGGTGACTGGCCCAGTCAGGTAGAGAATCCAGCAAAAATGCTGAGAGGCTCAAAGCAGCTAAGTAGTAGCCTAAGACACCAATCATATAGTCACAACCAGGAGAGGACCGAGGTACCGAGGAAGCCAGAGAGATGAGTACTGGGTGACAAGCTTGAGAAAGAGGAACACTGCAGGCATGAGATAGATGAGGACAAAGGACTGATTCACCCCTGACCCTGCCTGGAGTAAGCAGCAGTAGTCTGTTAGGCTGAACCCAGTAGGACTGCCGTGGAGAGGTGGGTTTGATCCAGACCAAGAGGGCCAGAAGGCAGGGAAAGCACATGGGGGTTCATCTCGAAGACGTAGCAACACAGTTGTAAGGACCATGGACCTATCTTAAATTGGGGACCCATGAGCCTGGGACTAAGAAACACGTAGTATGGGAAGATATTTAAGATTATGTCTGTATGTTCAGGCAATTGATACTTATGTGTGCTGTGAGAGCTTGACCATAGGTGCATGCTATAATTTGAGGAAGGTGACAAAGTATATTAAGCCAAGAAATGCCTGCAAAGAATTCATCATGTCTTCTTAGCACTCGTGAAATTTGGAGTTGGATTTCCCATAAACCACATGGACAAAATCCCATGATGCCATATGGTAGGGACCCTTTTCATTGAGAAAGGAAAGAAAACCTGTCCATTTCACATCACAGCAGATGGCTGTGAGCCTGAGCAAGCCTCAGCCGAGACAACGCAGGGGACTGGGGAGCTGGCTCAGTAGGTGGAGTGCCTCCTGCCCTGGATATACAAAGCTCTAGGTTCCACCCCCAGGTCCATGCCTTGCTCACACCTGGGATCCTACAGTCCCACACCCTGTTCACACCTGGGATCCTACAGCCCCACACCTTACTCTCACCTGGGATCCTACAGCCCCACACACTGATCACACCTGGGATCCCTACAGCTCTACACCTTGCTCACACCTGGGAATCTACAGCCCCAACCCTGTTCATACCTGGGATCCTACAGTCCCACACTTTGTTCACACCTGGGATCCTACAGCCCTACACCTTGCTCACACCTGGGATCCTACAGTCCCACACCCTGTTCACACCTGGGATCCTACAGCCCCACACCTTACTCTCATCTGGGATCCCTACATCTCTACACCTTGCTCACACCTGGGAATCTACAGCCCAACCCTGTTCATACCTGGGATCCTACAGTCCCACACTTTGTTCACACCTGGGATCCCTACAGCTCTACACCTTGCATACCTGGGATCCTACAGCCCCACACTTTGCTCACACCTGGGATCCTACAGTCCCACACCCTGTTCACACCTGGGATCCTACAGCCCCACACCTTACTCACACCTGGGATCCTACAGCCCCACACTTTGCTCACACCTGGGATCCTACAGCCCCACACCCTGTTCACACCTGGGACCCCTACAGCCCCACACCCTGTTCACACCTGGGATCCTACAGCCCCACACCTTGCTCACACCTGGGATTCTACAGCCCCACACCTTGTTCATACCTGGGATCCCAACAGCCCCACACCTTGCTCACACCTGGTATCCTACAGCCCCACACCTTGTTCATACCTGGGATCCCAACAGCCCCACACCCTGTTCACACCTGGGATCCTACAGCCCCATACCTTGCTCACACCTGGGATCCTACACTTGCTTGTCACCTTTCTGTTGTTTTTAGTTTAGTTCCATTGAGGCCATAGATCATACTTTTGTCAGTTAAACTCTTAGAAATAGGAATTAGAATGATGTTTCCCAGGGACTCAGGTAATAGATTACATTATTAAAGCCCTGGATAAACTGGCCCTCTTGTCATTACATAATGTCTTGCTATCCCTTCCTGGTAATTTTCTTCTCTTTGAAGTCATTTTTTAAAATTATTATAACCAGACTTATTTGGTTAATATTTTCTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTATCACTGAGCTAAATCCCCAACCCCGTTAATATTTTCACAACATATTTTATCTATCCATTTACTTTTAACATATATATGGCATATATGAGGTGAGTTTCTTATAGATAACACACACAAGTATGTTATTAAGACTGTTTTTAAATTACTTGTATAGGGGAATATGTACATGTTAGTGCAGTACTCACAGAGGCCAAAAGAGGGCATCAGATTCCTCCAGAACAGTGGTTCTCAATCTGGTTCATCACTCCCTTGGGGAGAACATATCAGATCTCCTGCATATCATATATTTATATTTGAGTCATAACTATAGCAAAGTTACAGTTATGAAGTAGCAATGAGATAGTTTTTAAAAAATATTTATTTTATTTTTATGTGCATTGGTGTTTTGCCTGCATGTATGCTTGCATGAGTGTGTCTGATCTTGGAGTTAGCCGTGAGCTTCCCTGTGAGTGCTAGGAATTGAACCCGGGTCCTCTGGAAGTACAGACAGAGCTCTAAATCCATGAGCCATCTCTCCAACCCTGCAATGAGGTAATTTTATGGTTGGGGTCGCTATAACGTGACGCACTGTATTCAAGGGTCACGGCATTAGGAAGGTTGAGAGCCGTGGCTGAAGTTACAGGGAATTGTGAGGGACCTGGTGTGTGTGCTAGGAACTAAATGCAGGTTCTCTGTAAAACTGGTGAGCCATCTCCAGCCCAAGTCATGTTTTATTTTTTAATCCGGTCTGACCGTGTGTTCTTCTTAACAGAGGAATTTAGACCATTTTAGTTTAATGTAATCCATGATACATATTCATGATTTGTCCACCATGTCCTTTTCTTTCTTGTGATTTATTTTTATTGTTTTCAACCATGTATATGTCAGGGTAAGGTGCGTGAGTGAGGTGCCACAGGCAATGATCCCCATGGAGTTGTAGTTCTAGGCAGTTGTGAGCAGCCTCCCAACATGCTGGGAGCTGAGCTGAGGTCCCCTCTGTAACGGTGGAAAGTTCTCTCAACCCCTAAACCATCTCTCCAGTGCCTGCCTTACTGTTTGCTATGTGATCCTTCTGGGGTTTTGTTTCTCTGAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTATGTGTGTGTGTCTAGAATATTTTGTTATCTTCCTAATTTACTTATTATGTTGGCTTTTAGTGGTTGCTGTGGGGAATCAAAGCACACATATGTGTTCACAACCCATTTAGAATCAACATCACCATGTCAACATTTTCCCACCACGTAGGACTTTTGACTGTCCTAATATGTCACAGCTGTCTTACAGATAATGGTGGTGATTTGAAAAGCTATCTCCTGGTCCATCCCGCTGATCTTAAGGAAGAGACGGCTGGACTTTGCTTCTAAGCATGCAGCGATCTCTGTCAGTCTCTAGGACACGCTGAGGGAGTTGACGCTCCTTCCTGAAGTGTCCTCTGGCTTTCCCCAG
Seq C2 exon
GTGCAACATCAGCTTCCTGGAAGAATGGCTAAAAGATAAGAATTTGCAGAACAGCTTAGCCAAGGAGACTCTGGAGCCCCTCTCTCAGGCAGCCTGGTTGCTTCAGGTTAAGAAGACCACAGACAGCGATGCCAAGGAGATCTCCCAGTGCTGTACTTCCCTGTCTGCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]