HsaINT0108863 @ hg38
Intron Retention
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52196309-52205147:-
Coord C1 exon
chr15:52204865-52205147
Coord A exon
chr15:52196484-52204864
Coord C2 exon
chr15:52196309-52196483
Length
8381 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCTTCTGCCTTTCCCTCCAGGTG
3' ss Score
14.27
Exon sequences
Seq C1 exon
TTCCGGGAATGCTGGAGTATGAGAGCCTGCAGGGCATTTCCGGCCTGAAGCCCACAGGCTTCCGGAAGCGCTCCTCTAGCATAGACGACACGGACGGCTACACCATGACCTCCGTCCTGCAACAGCTGAGCTACTTTTACACCACCATGTGCCAGAACGGCCTGGACCCCGAGCTTGTGAGGCAGGCGGTGAAGCAGCTCTTCTTCTTGATCGGGGCGGTCACGCTGAACAGCCTCTTCCTGCGCAAGGACATGTGCTCCTGCAGAAAAGGGATGCAGATCAG
Seq A exon
GTAAAACCCAGAAACCTCCGCTCACGCGGAGAGGCCTGCAGAAAGGATGCTCTTGAAGTCCGAGGCCCCACGCGCCTGACCCTCCCTGCTGTGGCGTCAAACCCCTGTTTAGGCCCTACTGCTGTAGGGATATTCGAGTCACCCTAGGAGCCCCGGGATGCTGGCGCCCAGGGCCTACTCCCCTCACGCCACACCCTGCCAACTAGATGGACTGGCCTAGCCGCTTTAACCCAGAACCAGTAGATGTTCATCTTAAATTCTGGCCCTCTAGGGTGGTCATGCACTCAACCAGTAGTGACTACCTTCTCTGAATAGCACTGCCAGGGGGAGAACACAGGAAACAAGGAAAAGTCGATATGATCCCTGCCTTTGAGAAGCTCAGAATAGCTAAATAATAATGAAAGGCAACTATGATTAAATCACAAACAAGTGGTGCAGGAAATGTATCAGAGAGGAGAGACATTGCAGACGGAACAGTTGGGGAAGCCAGAGAGTTGTGCCTTGAGTGATAAAGGAAACGGAGAAGAACGTTCCAAGCAGGAGAAACGGTCAGAGGCATTGCGGGGAGTGAGTGAGGACCTCTGCTCAGGCTGCATGTGGAGTAAGCGGAGGCTGGTGTGGGGAGCAGCAGGACCAAGGTAAAGAGCTAGGTTGGATCCACACTGGGAGGGTCTGGAATACCAGGCTAAGGCATTTGGAGTTCATCCTGAAGACTTGGGAATCTAGTTTTGAGGTGTGTCTACTATCTCTTAATTGAGACACCATGGACCCTGAGCCACTATTTGAATTAACACTGATCAAGTGATTGGAAAACACATAATATAGGATATTTACGTTTCTTATAGTGTGTGCAGAAATTTGATACCTGTATCTGTTATGAGAACCTGGGGTAGTGATGATGGTAATGACGTAAGGGAAGGTGACAAAGAAAGTATCTATCATTATGCTAAGTGAAATAAGCCAGGCATAGAAAGACAAACATCAGATGTTCTCACTTATTTGTGGGAGCTAGAAATTAAAACAATTGAATTCATAAAGATGGAGAGTAGAAGGATGGTTACCAGAGGCTGGGAAGAGTAGTGGGGGGCTGAGTAGAGGTGGAAATGGTTAATGGGTACAAAAAAAAGAGAGAAAGAATGAATAAGACCTACTATTTGATAGCACAACAGGGTGACTATAGTCAATAATAACTTAATTGTGTATTTTTAAATAACTTAGAGGCCGGGCGGGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCTGTCTTTACTAAAAATACAAAAATTAGCTGGGCGTTGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATCGCTTGAACCCGAGGCAGAGGTTGCAGTGAGCCAAGATCACACCATTGCACTCCAACCTGGGCGACAGAGCAAGACTCTGCCTCAAAAAAATAAATAATAAAAAAGATAAAATAACTTGGAGTGTAATGGATTGTTTGTAACTCAATAAATGCTTGAGGAAATGGATACCCTATTCTCCTTGATGTGCTTATTTCACATTGCATGCCTGTATCAAAACATTTCATGGGCCAGGCACAGTGGCTCACACCTGTAATCCCAGGACTTTGGGAGGTCGAGGTGGGCGGATCATTTGGGGTCAGGAGTTTGAGACCAGCCTGAGCAACATGGTGAAACCTCTGTCTGTACTAAAAATACAAAAAAATTAGCCAGGCCTGGTGGTGCACACCTGTAATCTCAGCTACTCATGAGGCTGAGACAAGAGAATCACTAGAACTGGGGAGGCAGACGTTGCAGTGAGCCAAGATCGCGCCTCAGCACTCCAGCCTGGGGGACAAAGCAAAACTCCGTCTCAAAAAAAAAACAAAAAAAAATTTCATGTACCCCATAAATATATATACCTACTATGTACCCAGAAAAATTTTTTAAAAATTGAGTATCTTAAGTCAAAAAATACATGTGAGAGGCATCCCTTACACCTTTTTAGCATTAGTGAAACTTTGGAGTTGGAGTCAATCCCCATAGACCATTCCCACAAATTCTCATGACAGCAGGGCATGGTTTTCAGATAGAAAGGGGTATTCAGAAGGACTAGTCTTTGCAGATCTTTATGTCTTCATTGAGAAATGAGTTATGTTTATTTCACAAGCTCCAAGCAGATCCTGTAGTCCTCTGTAGTAGATTTCAGCCCTAAAGTAAAGCCACATCAGAGCCTTTGCTAAACTCAGTTCTCACTCCCTCAGTGGATCCCCCAAGACTGAGTAGAGACATGAATGAAAAGGATCATGAGGGAGACACATGACTCCAGGTCTTAGAACAACTTCTTTGAGGACAGGCGAACACCTGCCCCCCAGGTACCCAGTACTTTTTCCCTTCCACCAGGTGGAAGTGGCCATCCTTTTCTTTTTCTTTTTTGAGATGGGGGTCTCACTCTGTCACCCAGGCTGGAGTACAGTGGCACGATCTTGGCTCACTGCAACCTTCGCCTCCCGGGTTCAAACAATTCTTCTGCCGCAGCCTCCTGAGTAGCTGTGGCTACAGGCATGCGCCACCATGCCCGGCTAATTTTTGTATTTTTAATAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTACAGGCATATGCCATTTTTGTAGAAACGGAGTCTCACTATGTTGCTCAGGCTGGAATCTATGCTTCCAAATGGGGACGTTTAGATCATTTTAATGTAATATAATATTTATATTTAGGATTACCATTTTATTAATTTCTGCTTGTTGCTTCTGGTTTTCATTTCTCCATTTTCTTTATCTGCTTCTTTTGGGTTATTTGAAATTTTTTAGTATCCCTTTCTAAATTATCTATTTTTTTTTTTTTTTTTAGTATTATCCCTTTGATCTTTTTTCTCAGTTGTTGCTCTAGGGATTCCAGTACATATACTTAACTTTTCACAGTCTATTTAGAATCAATATCTTACCACATCAAGTGGAATGCAGAAATCTTACCATCATGTAGGCCCCTTTAGCCTCCCTACTTTATGTTGCAGTGGTCTTATATATTAGATCTACATACATCAAAAACTGTACCATACAATATTATAATTTTAGTTTTCAACCATCAAACATATTTTAAAGAACTCAATAAGAGAAGAATAGTCTATTATACTCAACCAGGTATTTACCATTTCTGTTGTTTCTTCATTCCTAATGTTCCAAGTCTCATTTTTTTCCAAGTCTCATTTTGATATAATTTTCCTTCTGCCTGAAGAAAGTATTTTAGTATTCCTTTTAGAGCAGTTTTGTTGGCAATAAATTATTAGTTTTCTTTCAGTTGAAAATGTCTTCACTTTACCTTTATTCCTAAAGGGTATGTTTGTAGGATGTAGAATTCTGGATTGACAGTTGTTTTCTTTCACCACTTTAAAAATGTTTTACTTTTTTCTAGCTACTGTGGTTTCAGATAAGAAATCCATAGTCATTTGAATTATTCCCCATAAATAATGCATAATTTTTCGCTGATTACTTTTAAGATTTTTTTTTCTTTGTCTTTAGTTTTCCATAGTTTGTGATGTGTCTGGGTGTGGATTTCTTTGGTTTAGCCTGTTTGGAATTTCCTGAGCTTCTTGAATCTGGCCATTCACCAAATTTGGTACATTTTCAGCCACTGTTTTTTCAGATATTTTGTCTGCATCATACTCTTTGTCTTCTCTTTCCAGAACTTCAGTGAACCAGCTGTTAAAGACTTTTTGTTATTGTCCCACAGGTCCATAAAATTCTGCTCCTTTTTCTTAGTTCTTTTCTTCTGTGCTGTTCAGATTGGATAATCTCTGTTAATCCTTTCAAGTTCACTGACTCTCCTCTGTCATCTCTATTCTGCTAGTAAGCCCATTCAGTGAGTTCTTTTATTTCTATTATTGTATTTTTCAATTCTAAAATTTCCATTTGGTTTTTCTTTATATTTTCTGTTTCTTTTCTGAGACTTTATATCTTTTGATTCATTACAAGAGAGTTTGGCTTTACTTTTTAGAGCATTTTTATGATAACTTCTTTAAAGTCTTGGTCAGATAATTTGAATATCTGTGTCATCTCAGTGTTGACTTCTATTAGTTGTTTTGTTTAATGTGAGTTGAGATCTTTCTGGTTCTTCATATGCCAATTTTGAATTGTATATTGGATATTTTTAAATACTGTATTATGAGACTCTAGGTCTTCATTTTTTAGTTTATGTTTTTATTATTATTATTATTATTATTTAGTTACCCAAGCTTGAGTGCAGCAGCACAATCTTGGCTCACTGCAACCTCTGCCTGGGTTCAAGCGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAAGCACCCACTACCATATCTGGCTAATTTTTACATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAAGCTGGTCTCGAACTCCTGATCTCAAGTGATCCACTCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATCCCTGGCCAAGACTCTAAGTCTTTAAATCATATGGAGAATGTCAATATTTTCATCAGGCGGACAATGCACTTGGGTCAGACTGCAAGTTCTGACCACCCTCTATGCTTTGTGGTTCTCATGCCATTTCCATGTGTAAGGGTTTTGTGGTGCTCTTTGGGTCCGTTTCATATGTGTGAAAAATGGTGGCCAGCTTGGAACTTGGGTAATGGTATGTTTCATAGTTCAGTTCTTAAATTCTGTATATGCTGTTTAGGGTCAGATTCATGCGTGGGCTCAGGGATAAACCCAGGAGTTAATAAAGAACTTAACAAACTGCTTTTCCCAACTTTCCCAGGCTCCTCCCTTTCTGTGGCATTCCTATTACTTTCTGCCCCCTTTTTGGTGCTTCAGCTAGAAAACTGGAGCTTTCCTTAATTTGCTCTGCAGTGTACTTACTGCAGATGTCTCTATCTGGGGCCAAATGGTGAGGGCAAAGAGAGAACCTTGAACCACAGATCCTCCAATTGGAAGGGAAGTTTCCCTTCTCTTCGAGTTTTAGGTTCCTTCTGGCCTCCTTCGCCACCACTGCTGTCGACATGGGATTGGAACTTGAGCATGAGAGAATAGAGAAAAAGGAGAGGGAAAAGGTAGGGCATTGAGCATTAGGAGGCCCCTTTTCAGCTCCTTGAGCTAGAATCAGAGAGCTCCCCTGGAGCTCTTTGTTGGCATTGATGCCCACCTCTGAGTTTCAACCTGTGGCGAGTAGAGGCCAGTGAATAGCAGAGGGGAAAAGTGATGATCTCACTTTTGACTTGGAAGGACTTCAAATTCTGGTCATCTTCCCCAATACACCTGCTACTATTTACTTTTCCAAGTCCTCAAATAGCTGCCGAATGCATTCCATTCAGGCTTTATAGCTGCATTCAGTGGGACAGACAAGATGGAGTGTGGTTACTCCATCTCACTGGGAACTGGAAACCCACCACACATCTTTGAGTGGGAGAATTAATGTGCTCAAAATTCAGATTTTAGAAAGGACTGTGGCAGTATTTGAATAGGGTGAATTAGAAGGGCTGAGATGGGAGCCCCATTAGAAACCTGTAATAAAAACTAAAAGTAGGGCCGGGCGTGGTGGCTCACGCCTGTAAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCAGGTTTGGTGGCAGTAGCTGTAGTCCCAGCTACTCGGCAGGCTGAGGCAGGAGAATGGCGTCAACCAGGGAGGCAGAGCTTGCAGTGAACCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAACAAAAACAAAAACAAAAAACTAAAAGTAGGCCAGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCACCTACTCGGGAGGCTGAAGCAGGAGAATCTCTTGAACCCAGGACATGGAGGTTGCAGTGAGCTGAGATCGCACCACTACTCTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAACAAACAAAAAAACAAACAAAAAGCAACAACAACAACAACAAAAACTAAGCAAAAGTAATAAGAACTCAAACTAGTGGGACAAAAGTAGCAATGCAAAAATGAGGGATAGTGAGAACCAACCCAAGATATATCATCTCACACCCACTATCCTATGGAATAACATTAATTCAGCATCACTGTCCAAATGTTACAGCCAGAAAGAAGACCCACATGGGGCATTGCTAATCCTTAAGGTCACAGCTGGGACTGATTTTCTTTATTTTGAGAAAGTCTCACTCTTGTCGCCCAGGCTGAACTACAGTGGTGCAATCTCAGGTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGATTATAGGCGTCCGCCACCATACCCAGCTAATTTTTTTGTATTTTTAGTGGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGCGATCAGCCTGCCTCGGTCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCATGCCTGGCCCAGAGCTGGAACTGACTTTAGAGATCACTTTATTCAACACTCAATTTTTTTTAGCAGTTTCATTGGTATGTAATTTATATACCATACAGTTTACCTGTTTAAAGTATATAGTTCAGGCCAGGCACAGTCACTCACACCTGTAATCCCAGCGCTTTGGGAGGCTGAGGCAGGCAGATTGCTTGAGGCCAGGTGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTAGTGGCAGGCGCCTGTAATCCCAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCTTGAACCTGAGAGGTGGAAGTTGCAGTGAGCCTCATGAGATTGGGCCACTGTACTCCCGCCTGGGTGATAGAGGGAGACTCCATCTCAAAAATAAATAAATGAGTAAATAAAGTGTATAGTTCAATCGTTTTTGATATATTTACGTAGTTGTGCAACTATCACTGTAATGTAATTATAGAACATTTTCATCCCTCCAGAACGAAACCTTATACTCATTAGCAGCCAGTCTCATCCCCCACCCCAACTCCCTACCCTGCCCAGCCTAGGAAACCATTAATATGTTTTCTTTCTCTACAGATTTTGCCTATTCTGGACATTTAAAAATAAATGAAATCATAAAATGTTATCTTTTGTGGATGGCTTCTTTCACTTACGTAATGTTTGGGAGGTTCATCCATGTAGCAAATATCAGCACCTCATTCCTTTTTATTGCTGAATAATACCCCATTGCATGGATAATGCCACAGTTTGTTCATTCATTCATCAGTTGATGGATATTTTGGGTTGTTTTCACTTTTGGGCTATTATGAATAATGCTGCTGTGAACATTTGTGTACAGAGTTTTGTTTGGACATGCTTTCACTTCTCTTGAGTACATGTCTAGGAGTGGAATTGCTGTGTCATATGGTAAGTCTGTATTCGATTTTGAGAAACCACCAAACTGTCTTCCACAACAGCTGTACCATTTTACGTTCCCACTAGCAATGTTTGAGGGTTCTCAACACTCTCATTGTGCCCAGAGAGGTCGATTAACTTCCCAGGCTCACACAGTGGATTGGCAGGACTAAAACCCATGCCTCTTAACTCATAAACCCATGTGGCAATTAGTGACAGAAATAAGAATAAAAACTGCAGTCGACCGAAAGCCTTCACTAATTGAAAGATTTCTGCCAATTCAGGAAAAAGAAAACAGTTTTTTATACTTATGGAAGTCTTCTCTTCAGATATCACTGTTTCTTTCCTTTAATCAATTTTCAAAATTGTATTTCGTAAGTGATTGCAATCACTGTTCTTTGCTCAGATTTTCCCCAAAGTCTGTAGCTGTTCCGGCCCCTCAGCCTAGACCACCATGAGTCTTAGAACTCTGGATTAGGAGAGCTGATCATCAGTCCAACTCCCTCATTTTGCAGATGAGTAACTGCTGAGCTGTGGTCTTAAGGATCTCAGCGAACTCTGGTACCCTCTCGGGACACACAGGAGTATCTGGCACCCTTCCCTAAAGTATTCTCTGTTCTTCTGCCTTTCCCTCCAG
Seq C2 exon
GTGCAATATCAGCTACTTAGAAGAATGGCTTAAAGATAAGAACTTGCAGAACAGCTTAGCAAAGGAAACTTTGGAGCCCCTCTCTCAGGCAGCCTGGTTGCTTCAGGTCAAGAAGACCACAGACAGTGATGCCAAGGAGATCTACGAACGCTGCACCTCACTGTCTGCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development