GgaINT1019724 @ galGal4
Intron Retention
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1959564-1962812:+
Coord C1 exon
chr2:1959564-1962485
Coord A exon
chr2:1962486-1962716
Coord C2 exon
chr2:1962717-1962812
Length
231 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
AAGTTGTTCACCAATTGCAGGTC
3' ss Score
5.61
Exon sequences
Seq C1 exon
GTTAAGTGACCCATGTACAAGCAGGTGGGATGAAAGAAGTGCATCGCGGAGATCAAGATCGTGGTCACATAATGGCTATTCTGATTTAAGTACTGTGAGGTACTCCAGTCACCACAAAAAACACAGAAAAAAGAAAGTGAAACATAAAAAGAAGTCTAAAAAGCAGAAGCATTACAAGAAGCACAAGCAAGCTAAGAAAAAGAAAGCATCAGCTTCATCAGAGGTAGAATCCTCACGTTCATTCAGGAAGAAGAAATCGTCTTGTGATCGTGAGAGGAAATCTCGTTCCTCTTCATTGTCTTCTAGACGTTCATCCAGAAGAGACTGGTCTAAATCTGATAAGGAAGACCAGAGTTCATCAACTTTCTCAAGCAGAGAGAGTCGGTCATATTACAGGTCCAGGTCCAGATCCAGATCTAGGTCTAAGTCAAGGTCTTATTCCCAAAGAAGTTCCAGATCAAGATCAGCCTCTAAATCATCACATTCTCGAAGTAGGTCAAGATCAAGTTCTAACCCTAGGCATCAAAAGACTGTTTCCAATTCTCCACGAAATATTTCAACACGATTAAATGAAAATAAGTTGAACAAGCCTGCTGACCCTGTAAGAGCAGTTATACTACCAAGTGATAAAGTCGTCATCCCACCTGTTGTTCCAGAGAGCCTCCCTGTAATACCCTTAAGTGATAGTCCTCCACCTTCAAGGTGGAAGCCTGGGCAAAAACCATGGAAGCCATCTTATGAGCGAATTCAGGAAATGAAAGCTAAAGCAACCCATTTAATCCCCCCCCAGACTAACTATAATTTAGTAGTTATTAAAGAGGCTAACACTTCTTCGTATCAAAAGCAACAGGGGAGTTCTGATAGCGATCGAAGTGGCTATTCCAAATATCGTAGTGATAAAAGCTCGGATAGTTGGCAGAGATCAAGAAGCAGGTCCTCTCGAAGTAGGTCATACTCAAGATCTTACACGAGATCTAGAAGTCTGTCTAGCTCAAGGACAAAATCTCGTTCTTCTGGCAGATCACCATCACTGAACAAATACCGCAGTGACAGGTCAGGGTTTAGTGAGTCAACATCTTATTTTTCCCTTAGTGATGATGATAGACACAGAAGCAAAAGAAAATCTACATCAGGTGATCAGAACACTCGTTCTCTTAAAGTGAGGCAAGAAACAAGCTCTGAAAGTACCCTTCCTTATAAGGGTACGAAAGACTACGATGAATCTTCTCAAGGAGTGAAAGAGAGTGACAGTTTATCATCTTCAGACTTCTCTACTGACAGCGAGCATTCTGGTAAAGCAAAGGGAGCCCAAGAAAAGGAAGGCCATTTTCAATTAGAAGGTGATGCTCAGCAACAGGATAAAAATACCTTCCATTCTGTGAGAGGGGAGGAGAAATCCAAGCGTGAATGGGATGCTGATCATTCTAAAAAGAAAGCAGTTAAAGAGCAATCTTCTGAGCAACCTAGAGGTGGTGCAAAAAGTAAACAAAAATCCTATTCATGTAGTAAATGGGACTCTGAATCAAACTCAGAAAGGGGAGAGGTTCATCGTGGTAGGGGAGATTCCAAGCCCTTGTCTGATAAAGAGGAAGGAGAGGCCACATCAGGATCTGATACAGAACTTAGTGTTACCAAAAGGAGAAAAACAAAATCCAATTCCTCAGAAGGCGTTCTGGATTCTGATAGTGCATGGAAGATAAGCAAACAGTTATCATCTTCAGAATCTGAGAGTTCTCATTCTAACTCAACACATACCAGAGGAAAGTCAAAAAAACACAAACATGAATCGAAAAAAACTCCTAAAAAATCACATTCCAAAAAAGCAAAAGAAAAATCAAAAGGGAAAAAGGAGAAGAAACACAAAGTTCAGAAAAGAAAAGAAGTGTTTCATTGGCAACCCCCACTGGAGTTTGGTGAAGAAGATGAAGAAGATATAAATGAAAAGCCAGTTATCAAGGATGACAAAGAAAAGCAGCTTACCAGGGGTGTGAAGGATAAACAGCAACAAGCTTGTGAAAAGGATGAAACAGTCAAAGACAAAACAGGAAATGGTGAAAAGCCTAGTGCAGATGAAAACCTGCTAGTTAAAAATACTACTCCTGATGCCTCACCAAATCAAAATAAGCTTAATAAAGATAGCATCAATCCAAACACTTCAACCAGTATATTAAACTCAGGAATAAATGTGACTACTTGCAATAATGAGACTAAGCATGCTGAAGAAAGCAACCAGAATGGATTGGATGTAATTCAGACAGATGACAACATGGAGATTTGTACTCCAGATCGTAACTCACCAGGGAAGGTGGTTGTGGACACTTTGTCTCCTGTCATTCTCACTGATAAACCTCAGAGTTTAGGTGCTAGTATAAACAAAGATTTACAGACCTCTGAACAAGATGCTGTCAAACTAGGAAACAACCTTGTAGACTTCATTAATATTAAAGAAGAAATAGGAAGGCAAGAAAATAACTCTGTTCCTGCATCTAGTGCTAAAGACAGCAGTTTGAAAAATGAAATTGCTGAAAATACACAAAGCAATTCAATTGATAATAAATGGAAGCCCTTGCAAGGTGTTGGTAATTTGCAACCAGCTACAGTAAGTACTGCCACAGAAGTCAAGAATGTGGCTTCAGCACCAGAGGCTAAGCCAGCAGGTTTAAGAATTGAAATAAAAGCTAAAAATAAAGTAAGGCCTGGATCTCTGTTTGATGAAGTTAGGAAGACAGCACGACTAAATCGAAGGCCAAGGAACCAAGAAAGTTCCAGCGAGGAGGAGTCTCCAAGTAGAGATGACAATAGTCCATCCAGGAGCCACAGTAGGTCTCGAAGTAAATCCGAATCTAAATCCAGACACCGAACACGGTCTGAATCGTACAGTCACTCAAGAAGTCGATCCCGAAGCTCTACATATTCTTACAG
Seq A exon
GTAAAATGTTCATGTGTTCGCAGCCTACCAAGTTAATTTGAAAGTTTCTAGTATTCTGAGGCATGCTTTTCTTTCTCAGCCTAAGTTTTTCGTTCTTTTAAACAGTGCTTATAATTTAGTGAGTGTGGAACATATATTTAGTTTTAAAAATGCTTTTGTTTTTCATTTCCTTCTGCTCTTCACTTGTTATATTCTATTTTGTGATTTTCTAAAGTTGTTCACCAATTGCAG
Seq C2 exon
GTCGAGAAGCTATACGAGAAGCAGAAGTAGAGGCTGGTACAGCAGAGACCGGTCAAGAAGCCGGAGTAGTTCTTACCACAGTTACAAAAGTCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282:ENSGALT00000015998:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGATCTCTGTTTGATGA
R:
ACTACTCCGGCTTCTTGACCG
Band lengths:
299-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]