RnoINT0101351 @ rn6
Intron Retention
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130386727-130390432:+
Coord C1 exon
chr8:130386727-130389591
Coord A exon
chr8:130389592-130390336
Coord C2 exon
chr8:130390337-130390432
Length
745 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
TCTCACCCATTCCATTGTAGATC
3' ss Score
9.84
Exon sequences
Seq C1 exon
GCTAAGTGACCCCTGTTCAAGCAGATGGGATGAAAGGAGCTTGTCCCAGAGATCCCGATCATGGTCCTATAATGGGTACTATTCAGACCTTAGTACAGCAAGGCACTCTGATGGTCACCACAGAAAACGCCGGAAGGAAAAGAAGCTTAAGCATAAAAAAAAAGCTAAAAAGCAGAAACATTGCCGAAGACACAGACAGACAAAGAAGAGGAGGATAGTTATGCCACCTGATTTGGAACCCTCAAGATCTCCCACCCACCGAGTGAAGTCCTCCAGTGTTGGAGAAAGGAGACCTCACGCCTCCTCATCCTCTCAGTGCTCGTCAAAGCGGGATTGGTCCAAATCAGACCGAGATGACCGGAGCGCTTCCACCCGCTCCAGCAGAGACTCCTACAGATCCAAGTGTCATTCAGGATCAGATTCTAGAGGGAGCTCTAGATCAAGGGCTGCGTCAGAATCCTCATCGCGCTCTCATAATAGATCAAAGTCTAGATCTAGTTCCAGGTCTGGGCCCCGAAGAACAACATCAGTATCCCCCAAAAAACCTGCTCAGCTGAGTGAAAATAAGCCAGTTAAGACAGAACCTTTAAGGTCATCAATGCCACAGAATGGAAGTGTGCTTGTGCAGCCAGTGGCAGCAGAAAACATTCCTGTAATACCATTGAGTGACAGCCCTCCCCCTTCTAGGTGGAAGCCTGGACAGAAGCCCTGGAAGCCCTCTTACGAGCGAATTCAGGAGATGAAAGCTAAAACAACCCACTTGCTGCCTATACAAATCACATACAATTTAACAAATGTTAAAGGAACTGTGAGTTCCTCGTCTTATCACAAAAGAGAAAAAGCTTCAGAAAGTGATGGGAGTGCTTATTCAAAGTACAGTGATAGAAGTTCTGGAAGCTCAGGAAGGTCAAGGAGCAAGTCTTCTAGGAGCAGGTCATCCTCCAGATCATACACGAGGTCAAGGTCACGAAGTGTACCTACGTCCCGCTCGCTCTCTAGGTCTCCATCCTCTAGGTTTCACTCGCCAGATAAGTACAGTGATGGCTCCCGGCACAGCAGGTCATCTTCATACACTTCTGTTAGCAGTGACAATGGAAGACGAGCCACATTTAGATCCAGCAGGAAAAAAAGTATCACTTCAAATAAAAGACACCGCAGCAGCTCTGAAAAGACACCTCACAGTACATACGCCAAAGGCAGAGAGAAGTCTTCACGTCACAGGAAGTATAGTGAAAGCAGATCATCTTTAGATTACTCTTCAGACAGTGAACAGTCACATGTTCAAGGAGTACACTCAGCCCCAGAGAAGGAAAAGCAGGGAAAAGTGGAAATGTTGAATGGTAAACAGGGGAAAGGCAGAGAAGAAGGAAAATCCAAGCCTGAATGGGAATGTTCTCATTCTAAAAAGAGAACTCTGAAAGGTGATCTTCCTGATCACTCTAGAGGTGACAGTGTGTCCAAAGGAAAGAACTGTGCTGGGAGTAAATGGGACTCTGAATCAAACTCAGAACAAGATGTGACAAAGAGCAGGAAAAGTGATCCCCGGAGATGTTCTGATAAGGAGGAGGGGGAAGCTTCATCAGACTCCGAGTCAGAAGTTGGCCAGAGTCACATCAAAGCCAAACCCCCAGCCAAACCTCCAACAAACACTTCCCTGCCTGGCAGCGATGGTGCCTGGAAGTCTAGGAGGTCACGGTCTTCAGCCTCTGAATCAGAGAGCTCCTGCTCCAACTTGGGGAACACTAGAGTGGAGCCCCAGAAGCAAAAACATTTGAAGGATAGTCTTAAAGGGGAGAGAGAGAAATCAAAAGCCAAAAAAGACAAAAGGCACAAGGCTCCAAAACGGAAGCAAGCTTTCCACTGGCAACCTCCACTCGAGTTTGGGGAGGAGGAGGAGGAAGAAGAGGAGGTGAATGGAAAGCAACTTATGCAGGACCCGAAAGAGAAAAAGCATGTCTCTGAGAAGTATGAGGCTGTGAAAGACAATACTCCAAAAGGAGAGAAAACCTGTAATGAAGGTAGCTGCCCAAATAAACCCAAAATGGGTACTTTAGAGCAGGACTCACTTGCAGAGGGTGAGCATGATCTCAACTCTTGCCCTGCACCTCTGAAAGTGGAGGAAAACTCGACCAGCTCTCCCCCTAGCACCCAGCACCTTGAAGAGCCTGTCCCAGGTGGAGGGGAGGATGTGCTTCAGACAGATGACAACATGGAGATTTGCACCCCCGATAGGACTTCCCCTGCAAAGGGAGAGGGGGTGTCCCCTTTAGCAAACCACAGGCTAGACAGCCCAGAGATCAGCCTTATTCCAGAGCAGGATGAGCACATAGCACATCCCAGATCAGGAGGGAAACAAGAGAGCAGTGTGTCTGAAAGCAAGACCTTGGGTGAAAGTGGGGCTAAACAGGACAGCTCTACCAGCTTGACCAGTCCTGTAGAGATTGCTGGAAAGAAGGAGGGGGCTGAGAAGAGCCAGGTGAACCTCACAGATAAGTGGAAGCCACTGCAAGGTATAGGGAATGTGGCAGTGTCTGCTGCAACCACATCCAGCACTGTAGATGTAAAGGCTTTGTCTACCGTGCCTGAAGTGAAACCACAAGGCTTGAGAATAGAAATCAAAAGCAAAAATAAAGTTCGGCCTGGGTCTCTCTTTGATGAAGTAAGAAAGACAGCACGCCTGAATCGGAGGCCACGGAATCAAGAGAGTTCCAGTGATGAGCAGACACCTAGTCGGGATGGCGATAGTCAGTCCAGGAGTCCACACAGATCTCGAAGTAAATCTGAAACCAAATCTCGACACAGAACAAGGTCTGTCTCATACAGTCACTCACGAAGTCGATCTAGAAGTTCCACCTCATCTTACCG
Seq A exon
GTAAGAAATAGTTTCTTTCCTCTTTTACCCTTGAGGAGAATCTGCTCTCATTTAGCTCAGGAAAACATCCGCATTAGAAGTGTGATCACTGTTCCATATGACCAAACTACTGAGAGAGGACAGAGAAGGGGGCAGGCATTTCAGAACAAAGCATCGACCCTCCGAACAGAGTATAGTTTATCACTTGGACAAGGAAGGCTCTTCTTGTCATGATTGGTGGCAAGTTCTCCATATTCAAAGGTGTGAAGTAGCTGGCCTTGTGCAGGTTGCCATGCCTTTGCATAGAATCTTTTGAGCAGACTCTGTAGGGCTTGGAGATCATTGATCTTACTACTTGTTTACATGTGTAAAAGGTACATGCCACGCCACGCCACACCACGCCACGCAGGCAAAGTTGCTGTTCCAGGTACACATCTAAGTTGAGCTTTGTGATCAGGTCGTCAGGAAAGACGGGAGAGTACAAAGAGTGGAAGTAAAGCTAAGAAAAGGGGGTTCACAGGAACAGGAAGCCAGTGAGTAGTTGTGTTCATGAGCATGTAAATGTATCTGTTGGAGTCTTCTGTGACTTTATTTCATTGATTAAACAAACCATGGTGGCTTCTGGATTGCTTCCTTTGCAGTACATGACCCCGTCCAGTGAGTAGAGTTTGTAAAGAGACCTTACCCTGGTTTTGTTCCCCTCCTGCCCTGTTCATCCCAGCAGTGTGGGGAGTGTACATGTGCTTTCTCACCCATTCCATTGTAG
Seq C2 exon
ATCAAGAAGCTACTCTAGAAGCCGAAGCAGGGGCTGGTATAGCAGAGGCCGAACCCGCAGCCGGAGCAGTTCCTATGGAAGTTTCCATAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128:ENSRNOT00000071152:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTACCGTGCCTGAAGTGA
R:
GGTTCGGCCTCTGCTATACCA
Band lengths:
350-1095
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]