HsaINT0113803 @ hg38
Intron Retention
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42636868-42642596:+
Coord C1 exon
chr3:42636868-42639750
Coord A exon
chr3:42639751-42642500
Coord C2 exon
chr3:42642501-42642596
Length
2750 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TTCAATTGCTTTAATTGTAGATC
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTTAAGTGACCCCTGTTCAAGCCGATGGGATGAAAGAAGCTTGTCTCAGAGATCCAGATCATGGTCCTATAATGGATATTATTCAGACCTTAGTACAGCAAGACACTCTGGCCACCATAAAAAACGCAGAAAAGAAAAAAAGGTTAAGCATAAAAAGAAAGGGAAAAAGCAGAAACACTGCAGAAGACACAAACAAACAAAGAAGAGAAGGATTCTTATACCGTCTGACATAGAATCCTCAAAATCTTCCACTCGAAGAATGAAATCCTCTTGTGATAGAGAAAGGAGTTCTCGTTCTTCCTCATTGTCATCTCATCACTCATCAAAGAGAGACTGGTCTAAATCTGATAAGGATGTCCAGAGCTCTTTAACCCATTCCAGCAGAGACTCATACAGATCAAAATCTCACTCACAGTCTTATTCTAGAGGAAGCTCAAGATCAAGGACTGCGTCAAAGTCCTCATCACATTCTCGAAGTAGATCAAAGTCCAGATCTAGTTCCAAGTCTGGGCACCGAAAGAGAGCATCAAAATCACCAAGAAAAACAGCTTCTCAGTTAAGTGAAAATAAACCAGTTAAAACAGAACCTTTAAGAGCAACCATGGCACAAAATGAAAATGTAGTAGTACAACCAGTTGTAGCAGAAAATATTCCTGTAATACCACTGAGTGACAGTCCCCCCCCTTCAAGATGGAAGCCTGGACAGAAACCTTGGAAGCCCTCTTATGAGCGAATTCAGGAAATGAAAGCTAAAACAACCCATTTGCTACCCATCCAAAGCACTTACAGTTTAGCAAATATTAAAGAGACTGGTAGCTCATCATCCTACCATAAAAGAGAAAAAAATTCGGAAAGTGATCAGAGCACTTATTCAAAATACAGTGATAGAAGTTCAGAAAGCTCACCAAGGTCAAGGAGCAGATCTTCTAGGAGTAGATCTTATTCCAGATCATATACAAGATCACGTAGTCTAGCTAGTTCACATTCAAGGTCTAGGTCTCCATCATCTAGATCTCATTCACGAAATAAATACAGTGATCATTCACAGTGTAGTAGATCATCTTCATATACTTCTATTAGCAGTGATGATGGAAGGCGAGCTAAGAGGAGACTTAGATCCAGTGGGAAAAAAAATAGCGTTTCACATAAAAAGCATAGCAGCAGCTCTGAAAAGACACTTCACAGTAAATATGTCAAAGGTAGAGACAGGTCTTCATGTGTGAGAAAGTATAGCGAGAGCAGATCATCTTTAGATTATTCTTCAGACAGTGAGCAGTCAAGTGTTCAGGCCACACAGTCAGCCCAGGAAAAAGAGAAGCAGGGCCAAATGGAAAGAACACATAATAAACAAGAAAAAAACAGAGGTGAAGAAAAATCCAAGTCTGAACGGGAATGCCCTCATTCAAAAAAAAGAACTTTGAAAGAGAATCTTTCTGATCACCTTAGAAATGGCAGTAAGCCCAAAAGGAAGAATTATGCTGGTAGTAAATGGGACTCTGAGTCAAATTCAGAACGAGATGTCACTAAAAACAGTAAAAATGACTCCCATCCATCCTCTGACAAGGAAGAAGGTGAGGCCACATCCGATTCTGAATCAGAGGTTAGTGAAATTCACATCAAAGTCAAACCCACAACCAAGTCGTCCACAAATACTTCACTGCCTGATGATAATGGTGCTTGGAAATCAAGCAAACAGCGCACATCAACTTCTGACTCTGAGGGGTCCTGTTCCAATTCGGAAAACAATAGGGGAAAGCCACAAAAGCACAAACATGGGTCAAAGGAAAATCTTAAAAGAGAACACACCAAAAAAGTGAAAGAGAAATTGAAAGGGAAAAAAGACAAAAAGCATAAGGCTCCAAAACGAAAGCAAGCATTTCACTGGCAGCCTCCACTAGAATTTGGTGAAGAGGAGGAGGAGGAGATTGATGACAAGCAAGTTACTCAGGAATCAAAAGAGAAAAAAGTTTCTGAAAACAATGAAACCATAAAAGATAATATTCTAAAAACTGAGAAATCCAGTGAAGAGGACCTTTCAGGTAAACATGATACAGTGACTGTTTCATCAGATCTTGATCAGTTTACTAAAGATGATAGTAAACTCAGTATTTCTCCCACAGCTTTAAATACTGAGGAAAATGTGGCCTGTTTACAAAACATTCAGCACGTTGAAGAAAGTGTTCCCAATGGAGTGGAAGATGTGCTTCAAACAGATGACAACATGGAGATCTGCACTCCTGATAGGAGTTCCCCAGCAAAAGTAGAGGAGACTTCCCCTCTAGGAAATGCACGGCTTGATACCCCAGATATAAACATTGTTTTGAAGCAGGATATGGCAACGGAACATCCTCAAGCAGAGGTAGTAAAACAGGAAAGCAGCATGTCCGAAAGTAAAGTGTTGGGTGAAGTGGGGAAACAGGACAGCAGCTCTGCTAGCTTGGCTAGTGCTGGAGAAAGTACCGGGAAGAAGGAGGTGGCTGAGAAGAGCCAGATCAACCTCATTGATAAGAAATGGAAGCCCCTGCAAGGTGTGGGGAACCTGGCAGCACCTAATGCTGCCACATCCAGTGCTGTGGAAGTTAAGGTGTTGACCACTGTGCCTGAAATGAAACCACAAGGCTTGAGAATAGAAATTAAAAGCAAAAATAAAGTTCGGCCTGGGTCTCTCTTTGATGAAGTAAGAAAGACAGCACGCTTAAACCGTAGACCAAGAAATCAGGAGAGTTCAAGTGATGAGCAGACGCCTAGTCGGGATGATGATAGCCAGTCCAGGAGTCCAAGTAGATCTCGAAGTAAATCTGAAACCAAATCAAGACACAGAACAAGGTCTGTCTCCTATAGTCACTCAAGAAGTCGATCGAGAAGTTCCACATCATCTTATCG
Seq A exon
GTGAGCAATATTCTCTTTCCTTTCTTCTCCCAAGGAGAGTCTGTTATTGTTTAGCTTGGAAGAATATCAGAATTAGGGACAGAATCACTATTTCCAAATATCTGAAAGGAATAAGAAGTCTTGTTTTGTGTGATTCAGAGAGTAGATTGAAAACTTAGGGAGAGGGAATTTCAGGAGGAGAAATTTGGGCTGGGTTTACAAAACTATTACTATCAGTTTAAAGCTCTCTGTCACTAGAAATGAGTTCCCATGATAGGTGGTAAATTCTCCATCTTTAAAGGTGTGAGGCTGCTTCTTGCCAGTCAAGTGATGCCTTAGAAGGGAATCCTGAATTGACAGAATATATAGAATTTGCAGATCATTAATCTAACCTTCCATTTTACACATGTGGAAGTTGAGGGCCAGAGAGACAAAGTTACCTGCCCAAGACATGCATCTTAGTTTAGATGGGGCATAGGGATAAAAATGATCATCTTTAGATTTTTGTTGTTGTTTGAAAAGCAATAAAAGAATTTAAAACACCTTTTTCTCATCTTTGTCACTCTGCACCTTCATGAAAAGGTTTTTTGTTATTGTTATAAATTGCATCATAACTTGTCAGCATAGAATGGATAACAGAGATGAGAATTAAAAACTAAAAATATTTGTGATGGTAATAGGAAGTTAGTAAGCAGTTGTGTTGCATTCTTTTTCTTGTAAATATTTTATGGTTTTACCTGTTTCTTAATTATTCATATCCCTTATTTTATTGTGCTTGATATTCATCATTTGAACTGAAAATACCATAAGAATCTTTGACGTTTGTTTCCTTTCTAGTTATTCATCAGTCTTTCTTCCCTTGCCTACCCAGACTTCCTAAAAAAGGAACCGCCACGTGCCATCTATACTCGGTCTCCCATTTTCTCCTCGGCTGTGTGCTTGCTGCCTTCTGTGCCTTCCCCTCCCCGCATCTCTTAGTTTACTGACTAAGACTTTCAGGTACTTCTGATGGCCAGTACCATGGCGTATTTTCAGCCTCACTTCTGGAGCCCTCTGCTAGCTCTCCTTTCTCCCACTCAGGCCATTTCGTCCCTGTGTTCTAGGCTTCTCTTCTTCCTCATGGCCTTTTCTCTCTGAGTTCCTGTTGATAGATGCAGTTGCCTATTGAGCGACTCCAGCTTCCTGTCTGCTTATGATCTGCCTTAACCATTTACACAGAGACAGCTCTGAGCTATTCGTGATGCTGGCCACTCTTCTCATTTACCTTCCCACCTCTGCCTTGGAGTGGGTGGTATTTCAGTTTGTAATGAAGACAGCAAGGCGTAGAAAGGCTAAGGGACTTGTTCTAGGCTATGCAGCTAACAGGTAGTAGACTGAGATGGATAAGCCTGGGTGCTGCCCTGCCTCCCTGTTTTGGTTACCTGCCTGGGCCTGACACCCCCATTAGGCTGTGAACTCCTTGAAGTCAGGAACTGTGTGTTACTCATCGTTCAGTCACCTCACAGGGTCTGGCTTTATTATTTTTGGTTGAATAAATGACTACAATCTTATTAGAACATAACGTATTCATTTTCTTGCAGATATACTGGAAGCAGGTCATGTCTTCCAAAACATAGTGCATACTGAATAAAACCTATGGTGATATTACATAATGTCACCTGTACACAGAGGTATTGTTCTGTTCCTGAATGACAGGCCTAAAGTAGGGGAGAAGGGTGGGGAGCCAAGTGAATGCAGAGGGGCAGAATTGTACTGCTTACATTTTTGCTTGTTTTATTAAGTATTAGACATAAAAAATGATAAAAGTATAAAAAGCTATATAATACATACTCATGTACCTGCCATCTAGCTTAAAAAATAGATCTTTGGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGTACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAGGAGTTCAACACCAGCCTAACCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTAGTGCGTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAAGCAGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCTCAAAAAAAAAAAAAAAATAGAGCTTTGATGTACCAGTGCCACCCCTAGGTGCATGCCTATGTCCCAAAGTTAACCATTATTCTAAACTTTGGTTATAATTTTGTTGTCTTTCTTTATAGCTTTACCCCAAGTGTTTCTATCTTTATACAATGTTATGTTTGCACTTTTTATTAAGTAAAATACTTTTATATATATAGATGTTCTACATTTGCCTTCTTCATTCAACATTGTGTTCTAGAGATATATCCTTGCTGAAACATGTAGCTGTAGTTCATTTTCTTCAGAATATTTCGTTATATATCTCTACCTTAATGTTTTTTTAACCCATTCTACCATTAGTGGAGATTTGGTTTATTTTCTTCTCAGTGTTATTGGTGTTATAAATCAGGCTTCTATGAACATACTTGTGCCAATCTTTTCTTGTTTTTCTTTATTTTCTTCTGTTTGATTTTAACCATGGTTGTTTTGAGAGTTCCTCATTAGCTGACACTGTCATATCCACTGTGAGGAGTTTGTGAGAGGCCTTTCTTCTTGTTGTGTTTTCCCCTTTCTGCCCTACCAGTAATTAATTTTAATATCATGATGAGTCAACATAATTATATATTTTTTCAATTGCTTTAATTGTAG
Seq C2 exon
ATCAAGAAGCTACTCTAGAAGTCGGAGCAGAGGATGGTACAGCAGAGGCCGAACCAGAAGCCGGAGCAGTTCCTACCGGAGTTACAAAAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857:ENST00000232978:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=PU(87.7=9.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development