MmuINT0108803 @ mm9
Intron Retention
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121657149-121660880:+
Coord C1 exon
chr9:121657149-121660004
Coord A exon
chr9:121660005-121660784
Coord C2 exon
chr9:121660785-121660880
Length
780 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
TCTCACTCACTCCATTGTAGATC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GCTGAGTGACCCCTGTTCAAGCCGATGGGATGAAAGAAGCCTGTCCCAGAGATCCAGATCATGGTCCTATAATGGATACTATTCAGATCTTAGTACAGCGAGACACTCTGATGGTCACCATAAGAAACACAGAAAGGAAAAGAAGTTTAAGCATAAAAAAAAAGCTAAAAAGCAGAAACATTGCAGAAGACACAGACAGACAAAAAAGAGGAGAATAGTTATGCCTGATTTGGAACCCTCAAGATCTCCCACCCACCGAATGAAGTCCTCTTGTGTTAGAGAAAGGAGATCTCGTGCCTCCTCCTCCTCCTCTCATCACTCATCCAAGCGCGACTGGTCTAAATCAGACCAGGATGACGGGAGTGCTTCAACCCATTCCAGCAGAGACTCCTACAGATCCAAGTCTCATTCACGATCAGATTCTAGAGGGAGCTCTAGATCAAGGGCTGTGTCAAAGTCCTCATCTCGTTCTCTCAACAGATCAAAATCTAGATCTAGTTCCAGGTCAGGACCCCGAAGAACATCAATATCCCCCAAAAAACCTGCTCAGCTGAGTGAAAATAAGCCAGTTAAGACAGAACCTTTAAGGCCGTCAGTGCCACAGAATGGAAATGTGCTAGTGCAACCAGTGGCAGCAGAAAACATTCCTGTAATACCATTGAGTGACAGCCCTCCCCCTTCTAGGTGGAAGCCTGGGCAGAAGCCCTGGAAGCCCTCTTACGAGCGAATTCAGGAGATGAAAGCTAAAACAACCCACTTGCTGCCTGTCCAAAGCACATACAGCTTAACAAATATTAAAGCAACCGTGAGTTCATCATCTTATCACAAAAGAGAAAAACCTTCAGAAAGTGATGGGAGTGCTTATTCAAAGTACAGTGATAGAAGTTCTGGAAGCTCAGGAAGGTCGGGGAGCAAGTCTTCTAGGAGCAGGTCATCCTCCAGGTCCTACACAAGGTCAAGGTCAAGAAGTCTCCCTACTTCACGCTCACTCTCTAGGTCTCCATCATCTAGGTCTCACTCACCAAATAAGTACAGTGATGGTTCCCAGCACAGTAGGTCATCTTCATATACTTCTGTTAGCAGTGATGATGGAAGACGAGCCATGTTTAGATCCAACAGGAAAAAAAGTGTCACTTCACATAAAAGACATCGCAGCAACTCTGAAAAGACACTTCACAGTAAATATGTCAGAGGCAGAGAGAAATCCTCACGTCACAGAAAGTATAGTGAAAGTAGATCATCTTTAGATTACTCTTCAGACAGTGACCAGTCACATGTTCAAGTATACTCAGCCCCAGAGAAGGAGAAGCAGGGAAAAGTGGAAGCATTGAATGATAAGCAGGGGAAAGGCAGAGAAGAAGGAAAACCCAAGCCTGAATGGGAATGTCCTCGTTCTAAAAAGAGAACTCCGAAAGATCACTCTAGAGATGACAGTGTGTCCAAAGGGAAGAATTGTGCGGGGAGTAAATGGGATTCGGAATCAAACTCAGAACAAGATGTGACTAAGAGCAGGAAAAGTGATCCCCGGAGAGGTTCAGAAAAGGAGGAGGGTGAAGCCTCTTCAGACTCCGAGTCAGAAGTTGGTCAGAGTCACATCAAAGCCAAACCCCCAGCAAAGCCTCCAACAAGCACTTTTCTGCCCGGCAGCGACGGTGCCTGGAAGTCTAGGAGACCACAGTCTTCAGCCTCTGAGTCAGAGAGCTCCTGCTCCAACTTGGGGAACATTAGAGGAGAGCCCCAGAAGCAAAAACACTCAAAGGATGATCTTAAGGGGGATCACACAAAAAGGGCAAGAGAGAAGTCAAAAGCTAAAAAAGACAAAAAACACAAGGCTCCAAAACGGAAGCAAGCTTTCCACTGGCAACCTCCACTCGAGTTTGGTGACGATGAGGAGGAGGAGATGAATGGGAAGCAAGTTACACAGGACCCAAAAGAGAAAAGGCATGTCTCTGAGAAGTGTGAAGCTGTGAAAGACGGCATTCCAAACGTCGAGAAAACCTGTGATGAAGGCAGTTCTCCAAGTAAACCCAAGAAGGGTACTTTAGAGCAGGACCCACTTGCAGAGGGTGGACATGATCCCAGCTCTTGTCCTGCACCTCTGAAAGTGGAGGACAACACGGCCAGCTCTCCACCTAGCGCCCAGCACCTTGAAGAGCATGGCCCAGGTGGAGGGGAGGACGTGCTTCAGACAGATGACAACATGGAGATTTGCACGCCTGATAGGACTTCCCCTGCAAAGGGAGAGGTGGTGTCCCCTTTAGCAAACCACAGGCTAGACAGCCCAGAGGTGAACATTATTCCAGAGCAGGATGAGTGTATGGCACATCCTAGAGCAGGAGGAGAACAAGAGAGTAGCATGTCTGAAAGCAAGACCTTGGGTGAAAGTGGGGTTAAACAGGACAGCTCTACCAGTGTGACCAGTCCTGTAGAAACTTCTGGAAAGAAGGAGGGGGCTGAGAAGAGCCAAATGAACCTCACAGATAAGTGGAAGCCATTGCAAGGTGTAGGGAATCTGTCAGTGTCTACTGCAACCACATCCAGTGCTCTGGATGTGAAGGCATTATCTACTGTGCCTGAAGTGAAACCACAAGGCTTGAGGATAGAAATCAAAAGCAAAAATAAGGTTCGGCCTGGGTCTCTCTTTGATGAAGTAAGAAAGACGGCACGCCTAAATCGAAGGCCACGGAATCAAGAGAGTTCCAGTGATGATCAGACACCTAGTCGGGATGGTGATAGCCAGTCCAGGAGTCCACACAGATCTCGAAGCAAATCCGAAACCAAATCTCGACACAGAACAAGGTCTGTCTCATACAGTCACTCACGAAGTCGATCTAGAAGCTCTACGTCATCTTACCG
Seq A exon
GTAAGAAATAATCCCTTTGTTTTGTTTTGTTTACCCCTAAGGAGAGTCTGCTGTCAGCTCAGAAAAACATTAGCATTAGAAGTGTGATCACTGTTTCCAGATATCTGACAAGAGAATAAGAAGCGTTCCACATGACCAAAACCACTGATAGAGGACATAAGTAGGGAGAGGGCATTTCAGGACAGGAAAAGGACTCAGCTGAAGAGACCTGTAGTTTTATCACTTGGGCAATGAAACCTCTTGCCATGACTGGTGGTGAGTTCTTTATATTCAAAGATGTGAAGTACCTGGCCTTCTTGTGCAGGTTGCCATGCCTTTGGATAGAATCCTTTGAGCAGATTCTGTAGAATTCTTACAGATTATTGAACTTACTACTCTGTTACACCTGTAAAAGGTAGATGCCATGCATGGAGGCAGAGTTGCTAAGTCGACCTTGGTGATCATGGTGGAATTTTTGTTGGAGACCTATCCAGCATTTGTCATCTTGAAGAGTTCAAAGACTGAGAGTGAAAGCTAAGAAAAGGTATTCACAGTAACAGGAAGCCAAATAAGTAGTTGTGTTCACGAACATGTACATAGGCCTGTTGCAGTCTTTTGTGACTTTATTTTATTGGTTAAACCATGGTGCCTTCTGGATTGCTTCTTTTGCAATCCATGACAGTGTCCAGTGAGCAGAGTTTGTAAGAGACCTTTTCCTGCTTGTGTTCCCCTCCTGCTCTGTTCATCCCAACAGTGTGGGGAGTGCACATAGTATATGCTTTCTCACTCACTCCATTGTAG
Seq C2 exon
ATCAAGAAGCTACTCTAGAAGCCGGAGCAGGGACTGGTATAGCAGAGGCCGAACCCGCAGCCGGAGCAGTTCCTATGGAAGTTTCCATAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-Nktr:NM_010918:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCTCTGGATGTGAAGGC
R:
GCTCCGGCTTCTAGAGTAGCT
Band lengths:
346-1126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: