GgaINT1019968 @ galGal4
Intron Retention
Gene
ENSGALG00000027907 | NR2F1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
Coordinates
chrZ:58199293-58204357:-
Coord C1 exon
chrZ:58203830-58204357
Coord A exon
chrZ:58199574-58203829
Coord C2 exon
chrZ:58199293-58199573
Length
4256 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCGCGCTGCGGCCCGGGCAGACG
3' ss Score
2.29
Exon sequences
Seq C1 exon
CGGTTCAGCGAGGAAGAATGCCGCCCACCCAGCCCAACCCCGGCCAGTACGCCCTGACCAACGGGGACCCCCTGAACGGGCACTGCTATCTCTCGGGATACATCTCCCTGCTGCTGCGGGCCGAGCCCTACCCCACCTCCCGCTACGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCCGCCCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCCGACCTGCAGATCACCGACCAGGTGGCCCTGCTGCGGCTCACCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGTGCTCCATGCCGCTGCACGTGGCCCCGCTGCTGGCCGCCGCCGGCCTCCACGCCTCCCCCATGTCGGCCGACCGCGTCGTCGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCACGTCGACTCGGCCGAGTACAGCTGCCTCAAAGCCATCGTCCTCTTCACCTCAG
Seq A exon
GTGAGCGCTGGGAGCACCCGGGGAGGGGGGGGGAGGAGGGGACGTGGGGGGTGGCAGCTCCCACGCGCGTGGGGTGGGAGCGGCGCGGCCTGCCCCACTCTGTCCCCATAAACACTCACACGCATGGATATAAACACACGTATATATCCATCAAATTAAGTGGAGGCGGTGGAAACACGCGTGCACGCATGTTAACAATTTTTCCCGGTGATAGATGGTTCGAATTAACTGGCAGGAAAGTGCATTAACAGCGCCTTTGAAGTGCTCTGGTTGTAGCCTATAAGAATATAATACATCTTCTATTATTATAACCTGCGAGGGGGAAATTTATAAACATCAAAGGCGAACGATGCGAGGGAAATGTAGGAAATAGGAGCGAGGCGAGATAAGGGGCCTCGCAATGTCATTTTTTAATTATTATTCTAATTATCGCCACGATGGGGCTAATTGCCACTTTCTCCACTTGTTTGTTTTCCTTTTTCTCCTCTCCCCTCTCCTGTCTGGCCGGTTTGCTGTTTCGGGTTCGGTTGCGGTGCTGCTGTTGTGTTTAACCTTGTCTCCCCGCTCAGCGATACCCAAAGAGTCCCAATAAATCTGACTTAAAACCAGGGCCGAGGCAAAATTAAAAGCATTCCTGAACAAAGATGGCAAATCGTTCAGAGGCCTGGTTTAACAGTAAGCAGTTTATAATCCATCAATATCTGCTGCCTCCCATGCATGAAAAATAGTATTTACATTGTATTAAAATGACTCCTAAATTTGCACAATATTGTAATGTAGCAAATGCAGTATTAATATCGATTTGAACATCGGATAATTTATTTAGACAGGAGCACCTAATTTGTATGCAGGGTGGTCGGAGCCGTGTACTGTGACTGCCCCCTTCTCCTTCCCGTGCAAATGCAGGCGCTCCGCATCGGAGGGAATGCTTCTTTGCAGAGGATCAAGTGCAGATCTTAAAACAAATGGAAGATGTGCCGAATAGCCAGCACCACGTTTCGGTGCATTTTATCTTAATAAGTCTTCCTGATGGAAACATGTTTTTCAGAAGTGACAAAGAGATCTGGCTGCATTTATCAGGCGGGTGCAGCGCGCTGCAGCCCTGCGCTCCCCCCCACCCCACCCCCCATTCATTTATGGGTCTCATCAATAAGTGGGGCCGAGTGGGGAGAGCCCATCCCTTCTCCAGGACCCCACTCGGAGGAGTTACGCCCTGCAGAGAGGGGCTGCCCCGCACCCTTCTGGCAAAGGCTCGGGGGAGGAGATTGCCCCACATGAGGACATTTGGGGATTTTTTTGTTGTTGCTTTTTGGCTTGGTTTGGGCTTTGCTTCTGATTTTGTTATTATTCTTATTTCTCTCTCTCTCTCTCTCTCTCTCCCCCCACCCCCAGCCCCCTCTGCCCTCCTCAGATGTCCGACCTTGGCTGGAGAGGCAGCCAGAGGCTTCAGATGAGCCCCTCATTTACATATATTAAAAACAAATGTAATAATTGTTTGTGAGGAGAGAAGCCCCTTCCCTTGATGGAGCAGAGCATGAATGGGGGCTGGAGAGAGAATAATATTATTTTGGAGCAGAATCACACGGGGCACCTCAGAAAATGGAAATACAGCTGTCAGGAGTAATCCACCCCTTACCCCCATCCGCACATTTCCACTTTTCACTAAACTTGTTTTGATTGCTTAGCCAGAGGGGAATTCATGGGAAGCCTTGCTCAAAGTCATCCAACTTTTAAACAAACTTTGACTGATGGAAAAGACATTTTTAGGCATATTGTCCTAAGTCCTGAGGACTTAGCATTTAAAGCTGGCATGGGTTCCTCCCGTTGTGGTTTTTACATTTGGGCTCTGGATAGTATGTTCAATGCGTAAAATTCTGGACACCGTCCAACAGCTGGGTCGCGACCCAAAACCTGCTGCTTTTCTTTAGTTGTTATTTATTTATTTCCCCTTTTCCTCGTTCCCAGTTATTAGTTCCTACACCTTCTTTTCCTCCCCATAAATAAGCGTTTCCAGGAAGGGACCGGGCTAAATAACGCAAACCCAATAAATCTATTTGCAGTGCAATAAGAACTTTGATTTCTAGTTAGATGCTGGCTGATTACATCTATATTTCCTGAGCACTAAACTCTTCTGAAGGCGTAACATGAAATACATTCCCACCACTACAAAGGGGAAGGCAGGAGTGTGCTGAGCAGTAATGGTTATTTATTTACATAATTTCTTTTCCATAGACTGCAGGAAGAAATATAGAGCTTTCCTGTATTGACACTCCGCCGTATGAGAAAGTGAGGCGCACAGAATTTCCACATTAGCCCACTTTCTGCGATGGGGTAATAATTCACCCCTGGTAAACGTGGGCTGTGTTGTCTCTCCCATAGACCGCACCTCTCTGAGGGCTCAGCAAGCTGCACACCTCTTAATTATTATTATTTTTAATCCCCTCCTAAAGGGAGAATTAAGCCTCCCCACCGCCACCTTGGAGGATGCGATACACAACCCCAACGAACGCATCTGCCAGAGCGTTTGAAATAACCACAGCTCCATGGGTGCCCTCGGCATGAGGGTTGGGAGGTGAAGCTCAAACCCAGCCCTGCCTGCACCCTGCCGCAGCACCGTCCCCATCCCTGGCGCCGCTGACCTGTGGTATAGGTGGACCTGATAAATATTTTACTAACCTTAAGGGTATGACATATGGGGCATAAAGAGAGAGCCCTGCTAGGGTGTCAGTGAGACCCTTTCATATCGCATTGTTTGGAAGTTGAATAGGATCCTAGTGCATAATGGGCAGATAATGCATGTAAAATAGCAAGATATATGTAAATATGGAGTGTGATTTGTGGCAATCAACATATGAACAGGCCTGTGGTTTTGATATATGTTGCAAACAAGAACAGGCCCGAGCGTTTGATATATATATATTCTGCAACCTGGTGCTTTAGATGTGGGAAAATATCACTGCATTAAAGGTACAGTATGGATTAGCAGTGCAGCCCAGCTCAGATAATTGTACATCTGAGGGACACCAGGTCCGCGGCGCGGGTCAAAGGTGCCCTCTTCAGAAGTTCCTGAATTATGGCGTGTTTTATTTGTATTTTCGCTCGAGGCCACAGCATTGTAGATGAAGGTGCTCAGAAATCCGTGTGAGGCCACTTCTTGATACGGGCAGGCACAAACTTCAAATATCCCGTTGCTGCAGATTTTTTGTTTTGTTTTGTTTTGTTTTCCTTTTCTTTTCTTTTTCTTCTCTTTTCCCCCCGCTTTGAATAATTTGTTGTGTCTTTCCAGGGTCATAATTCCACATTCACAATTTTGTAATGTCCTTTTGGGGGCCATTAACATGCATTAATTCATATACGGATCTATATATTAGCAAAGTCTGCCTTTGATCTGCGCTAAACCGCGCTGCCAGCTGACTGCCTCCCTCTGATCCTGACGTGTTGTCGGGCTTTTTCTTTTTCTTTCTTCTTCCCCCCCCCCCGCCCCCCCCCCAACATATATATATATATATATTTATTATTAATCGGCGAAACAGTGTGGATGTCGCAGCCGCTCCCTTCCGCAGCCGCACCGCCGCCGCCGCCGCGCTGGGCTCTGTGCGAGCGGGGGTGCAGCGCAGGGCCGCGCGGGGCACACGCGGGGCTGTGACCGCGGGCTGCGCGAGGTCAGGGCCCGCCCGGCTTTGTGTGCCGGAGCTCCGCGGGTCCCCGCGGGCCGGGTGCGGGGCGCGGTGCCCGGGGCGGGGCGGAAGGCTCAGCGCGGCATCCCCTGGCCGCGGCCTTCCCTTGCGGCTGATGCGCAGCCATGTCGGCAAACTCGCTCCGTGTGCGCGTGTGTGTGTGTGTGTGTCTGCGCGCGGCGGCAGCTCTCTCTCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTCCCCTATAATTTTCGCTCCCGTCGGCCTCTCTCCCGCCGCCGCTATTTACCGGGGATGAGCTCGGAAGGGACTCCGAGATGGGGGATGTCTGTCACACACTGTGGGGTGGGGGGGGAGGGGTGGGGGTCGTCAGGTCGCGGCCCCCCATACATCCGCGGGTGCGGTGTTTATTATGGGGGGGGGGGGGGGAGAGTGCACTGAGTGGGGGGGCTACGCGCAGCCTTGCGGTCCATCCATCCGCCGCCACTAACCGCTTCCCTTCCTCCCCCCCTCTCCTCCTCTCCCTTCCGCATCCCCCCGCCGCCCTTCCGCGGGCGCGCTGCGGCCCGGGCAG
Seq C2 exon
ACGCCTGCGGGCTGTCGGATGCGGCGCACATCGAGAGCCTGCAGGAGAAATCGCAGTGCGCGCTGGAGGAGTACGTGCGGAGCCAGTACCCCAACCAGCCCAGCCGCTTCGGCAAGCTGCTGCTGAGGCTGCCCTCCCTGCGCACCGTTTCCTCCTCCGTCATCGAGCAGCTTTTCTTCGTCCGCTTGGTAGGTAAAACCCCCATCGAGACCCTCATCAGGGATATGCTACTGTCGGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAGTGCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027907:ENSGALT00000033927:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]