RnoINT0102974 @ rn6
Intron Retention
Gene
ENSRNOG00000014795 | Nr2f1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:RGD Symbol;Acc:621682]
Coordinates
chr2:5569935-5576549:-
Coord C1 exon
chr2:5576022-5576549
Coord A exon
chr2:5570968-5576021
Coord C2 exon
chr2:5569935-5570967
Length
5054 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTGTGGCTGCTCTGACAGATG
3' ss Score
7.11
Exon sequences
Seq C1 exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTACGCACTCACAAACGGGGATCCCCTCAATGGCCACTGCTACCTGTCCGGCTACATCTCCCTGCTGCTGCGAGCAGAGCCCTACCCCACGTCGCGTTATGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGTTGGCCGCCCGCCTCCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCGTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCCATGCCCCTGCACGTGGCGCCGCTGCTGGCAGCAGCCGGCCTACACGCCTCGCCCATGTCCGCGGACCGGGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCTGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTGTTCACGTCAG
Seq A exon
GTGAGGATGCGGTTGCGGGGAGGGCAGGCTGTGCGGTGAGCTGGCACTGGGACCGTGCGGCGGGCGCCTAGCTCCCTGCAGCTCCTGTGCCACCGCTGTCGCTGTGAGGCCGGGCCCTCGAGCCACCGTGGGCCTGCCCAGGGTCTGCAGCCCCGGTACGTGGATGTCGCCGGCCGCGCCGCTGCCATCTTGGGAGCGTAGTGGTGCTGGAGCGGAGGAGGCGCGGGTGAGGCCGGCGGCCTGGCCTGATGGATGGCCTGGACTCGGCGCGCCCCGAGAGCGAGGCGACTGTGTGTCTGGGGAGGCAGGACACTGGCTCATCTAGCTGCTGTGTGTGAGCTCTCTGCATGTGCGTGTGCGTGTGCATGTGCGCGCGCGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAGAGCTCAGTGTTTCTGGGGGAGGAACGATACAGAAGGAAGAAGAAAACGTGGGAAGGTGGCTTCCTAGTCTGCGTGGCACTCTCCTTGGATGAGTTTCCTGACAGAGAGACACAGACAGAGGCGGAAAGAGAAGAATACGCACAAATAAATCATAAATAATCCCGCTTTATTGCCTGATTTTCCCTTATCGGAAACCATTCATGTTTGCAGTTGCTGAGGTTATTGAGGGTCGTAAAAAAAAGAGAAAGAAAGAAAACGGATTCGATATAAACAAGAAAGATAAAAAAACAAAAGCAATACTGTAAAACCCGCAAGCATGAGAGGACTCCGGGCCGGGAGATAAATTTCATAGCCATGCAAACACACAAACACTGGAAATTTAAAAGGGATACCTTAAAAATATCAAATTAAGTGTAGGCGGTGGTAGCATGCATGTTAACAATCTCTCTTATGATAGATGGTTCAAATTAACTTCCAGGAAAGTGCATTAACGTTGCCTTTGAAGGGTTCTGGTCTAAGCCTGTGAGAACACTATCCGCTTTTTATTATTGGAACTTACAAGAGGGAAATATATACACACCAGGGACTGCAGGTAACGGAGAAATACAAACAAAGCCAGAAAGAACTCTGCTTGGGCAAAGCTGCTTACATGGGTCTTGAGCTCTGCCCATGATAAGTAAGGTTAGCTGCAATTTTACCACCGTTATTGACACTATTGTTTTTAATTCCTCGATTAGGAGAACAAATAAACCATTCTAATAAATCTATCCCAGAGCCAGGCCCTCCAAAAGCCAAATTAAAACCACTCGAGCAGAGATGGCAAAACTCTTTCCTTGTTGAAGAGTAAGCAGTGGGATAATCTATCAAGATTTCTCGACTTTCATGCATGGAGAATCATATTTACATTGTACTAAAATGACTCTTAAATTTGCACAATATTGTAATGTAGCAAGTGTAGTATTAAAATCAATCTGAACAGCAGATAATTTATTTAGACAAGAGCAGCTCATTTGTATGCAAGATGGCCAGAGCCTTGGACTTGCCGCCCCCTTTTACTTTCTGTGCAAATGCAGGTCTGCTAGCGAGGGAGGGAGTCATTCTCTGCAAGGGGATAAAGTGAAAAACTTAAAACAAATGGAAGATTTATTGAATAGCTTCCTCGGGGGTTGAATGCATGTTATCTTAATAAGTCTTCTTGATGGAAATGTGTTTCTCAAAAGTGACAAAGAGCCTGGGAAGCCGCGAGCAGAATCCTTTGACTCTGCCTGGCCCAGGCCTGGCTGGCTCTCCAATCCATTCCTTTAGCCAAATCCATCAGGAAAGGAGCCAGTGTAGAGAAGCTAGGGTTGTAAAATCCCACCCAATGAAGTGTCTTAAAGCAAAAGTGTGTGCCACGAAGCTGGACAGAGGTCTTCTCAGTAAAGGTCTCATCTCTCTTTTCCTTGTGCCCCTGAAGTTCTCTGAATACCGTTGACTTTGCTGATCCGGTGCCATTTCCCCCGGGGGGGGGGGGCTATGATCGTGTGGGTTGTGGGAACATTGTGGAATTATGCACGCTTTGCTTTTACATTTTCCATCCTAGAGCATTCCTGTGAAAAGTTCCTTCGTTTAAAAATAAAAAAAGTTTTCCAAGGGAGTTTTTTGAACCAAGACTTTAAGGTGCAAGGGATGCTAAGACATGAACAATAATGTTATTTTGTTGGAAAGTCACAGACAGAATATCTGAAAATGGAAATAGAGCTGTCAGTAGTAACTCACCCCCCTTCACCCACCCCCTTTCATACAGCACATTTCCACTTTTGACTAAACTTGTTTTGATTGCTAGCCAGAAGGGAGTTCGTGGGAAGAAGGCTTCCCTAAGTCACCCAACTTTAAGCAAACTTTGAATGATGGAGAAGACAGTTTTAGACATATTGTCCAATATGGCTTGTCCTGGCTAAGTGTTTGAAGCTGGCATGAGGGTCCCCCGTGGTGGTTTTTACATTTGGCCTCCGGATGGTATGTTTAATTCTTAATATTCTGGACAGCATCCAAAGACTAGGTCATGACCTGAACTTACTTTGAAAAAAAAAGTCTTTAATTCATACACCTAAATATTCCTTCAAATAAATGAGACAGACTCTGAAAAGAGCCATCTAGTTAACATAAATACAATAAATCCATTTTCTGCACAATAATAACTTTGATTTCTAGTTATGGCAGCTGATTACATCTATATTTCCTGAACACTAAACTCTACTGAGTGCACAACATGAAATACATTCTCTGCGCTACAAAGGCTAAGCCGGGAGGGCCTGAGCAGTAATGGTTATTTATTTACATAATTTCTTTTCCTTATACTGTAGAAGAAATATTAAAGGTTCCCACATTGACAATACCATATAAAAAGTGAGACAGGGATTTCGTATGTTCTCTCTCCTTTTCTTATCTGGAGTATAATTCATGGGGGCAAATATGTACTGAATTACAGCCTTTGCCCACTTCTCTTTACCATCACAACCCACCAATTGATTCAAACACTTGTCCTGTCTGTGTACAGCTGGGAGAATCCTGCTGCATAGGTGAATGATTAGGCAGTGTGTGAAGCTGGGCCAAAACTAGACTCATGATGGTAAAGGCCACCAGGAATAGCTGACTGGTAACAGAGGCACCCTCAACCCCAGTCACTCCATTTCAAAGGTGAAAGGCCGTGAAAGCAGTCGGTGTAGGACCCAAGTGTACCGGTCTGGGCTTCCCCTTGGAGTTGCCTAGGGGATGAGAAAGGGACCCTAATGTTTTACTGATTTAAGGACATGTCAAACAGATATTTAGGGGAAAATCTGTTAGGATATCAATGCGACTTTCTCATATTGTGTTTTCTGTGCCTGAGACTATCCCATGATGTGAGGACAGAAAATGTATGCAACACAAGATATATGTAAATACATCACACACAAGTCTGTGTGGTGGCCATTCAGCAAGACTATGCTAGAAAGCAGGCCCAAGGGCTGACCTCTGAGTCCCCTCTCTATGCACTAAAGCCTCCAGGTGCTCCTGTCCTGTCCTTGCTGGCCGTAATAATCTCCCTGGTGTCCCAACTTGGACCAGTATGGATGCACTGCACCAGCTGGATGAAGTAATTAGACATCTGAGAGGAACCCAGTTTGGACCTGAGGTCAAAGGAGACTTGCCTCAGAAGTTCTTGAATTATCACTAGTTTTATTTAAATATTTGCTTGAGGCCATACCCTTGTAGATGAAGGTGGCAGACTGCTTTGTGAAGCCTAGTTCTTGAACCAATACACAGCACGGAAACAGCAGACAAAAAATTTGCTTTGAATAATTTGTTTTCTTAGGGTCACACTTCCCCATTATACAATGTTCTGTTACAGGTGTTGTCATACATAAATCCCTTCCCAGATCTATATATTAGCAAATGCTGTCTTTGATCTCTGGCCAACCTTCTGACTGGCTAAGGGTTCCTCTGATCTTCCTGTTTTTAAAACATGCCTTATTTTTATTAAGAAATAACATAGGAAATGAGAGGGAAGGGCCACTGTTTCTCTGACTCCATGTTCCTGTCCATTCGCTTGGCCCTGGTTAGTGGGTACAGGATAATCTGCTGTCTTGAAATATTTTTAGACGACCCAAAAGAGCTTTGGTTGGTTTGAAATAACCACAAAGGGTTTCAGTTGCCATTATTGTATAAAGTGCCATGTCCACTTCTCCCTTGGTCCTGCTATAGGAAACCTATCTTCCCCCACATTCCTCCTAATTCCCTACACCCCAGTTCTGAGACAGAAGCGTCAGCTGCCTCTAGCCTAGCTTCGTGTCTGATCGCTGAAGATGTTTCCTTTCTGCAGCCTGGAGTAACTGAACCATTTCTCCTGATTATTATATGGCTTACAGAGATGGGACCAATTTTCAATTACTTGATCTAAGGAAGATAGAAGGTCCACTCTCACTGAGAATTTGTTGCAGGGCTCTATCCTGCATATATAGTTGATCTCAAATCCTATATTGGTATAGTATGGGCTTGATCTGATTCTCCGTTCTGCCAGCTTGTGATTCCCCATCCCCACCCCACCCCACACCCGCCCCTGCACCGTGTATTCACTACACAATATAGATTCTCCTTGAACTTGCAGGTTTCGGTCATTTGGGTTTGGTGGAGGGAGGCTCCTAGAAACCTTTAAAAACTGTTTCCAAGGCTGCATATTTCTTCAGGGGTTCCAAGCACTCCAAAATCGAGGGGCGGGGAAGGCAAATGTTTTTCTTCCAGAAATATGCTCCCCTGCAGGAAAAAAACAAGTTGCAACACACAGCAAACATGGATTCAACCATTGTGCATTATTTAATCCAAAGGTGAAAGAAGGGAAACAAAGCCAGGATGTACCTCTGTGTGCCCGTGCATCTCTCTCCTGTTCTCCTAGGCTTGGTGAAACTTGGATTTATTGTTATTTGTATAGAGGATGGGAAAAGGAAGGCAAAGAGGCATGGAGGGGGAAGAGGTTCTTTTCCTTTTCTTCTACTTCCTCTTCCTTTTTTCCTCAACACATTAATGGTTTGTATGCCTTTACTGCTCACTCACCTAACAGTCTGTCCCTTTCCCTGTCTCTCCCTCCTGTGGCTGCTCTGACAG
Seq C2 exon
ATGCTTGTGGCCTGTCGGATGCTGCACACATCGAAAGCCTGCAGGAGAAATCGCAGTGTGCACTGGAGGAATACGTGAGGAGCCAGTACCCCAACCAGCCCAGCCGCTTTGGCAAACTGCTGCTGCGATTGCCCTCTCTTCGCACAGTGTCCTCTTCTGTCATAGAGCAGCTCTTCTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACTCTCATCCGAGACATGTTGTTGTCAGGGAGCAGTTTCAACTGGCCTTACATGTCCATCCAGTGCTCCTAGACCTTGGGTGTTTCCCACCTGCCCCTGCACCCCCTAACTCCCTAGAGACTAAGCGGACTCACCCTGACCAAGGACTCAAAAGCCTTTGGGGATGCTGGTATGATGGCAGGCCAGGCAGAGGGGAGGAGGGCTGTGGACAGGAGCGGCCCACTCTGCAGGAATGCAACCTGAGCTGCAAACCATGAGAGAAAGAGACTCATTTAGGATCTGATCTGTAAGTACATTGAAATGGAAAGAAAAAGAACCTCCTGTCTGATGAGAAAATGGAAAAAAAAGATTTGGAGGAGAGGACCATGAGAAATGTAATAAAATAGAAGGACTCTGATGGACCTTCCAGGATTTACTGTGGATGGATGTGGATATATTCTGTACAGAAAACTACCCATATGGAAGTGGACTGAATCCTATGTAGAGACACACACTGAACATTGTTATTCATTTTGTAAAATACTAGTCTTTATTTTCATTTTTGTAAAATTTAAACATCGTATGCGCATAAACAAAAATGAACAAGAATTAGGGGGAAATAACATTTTCCAAATAATTATAAAATATTTGTCCTGTGTCTATGTATCTATATCTGTTTTGTATTTTTTTCTGGTTCCAAACCAGATTTCCTGTGATTCTATACTAATAATTTTTGATATAACCCTTTGCTTCTTATAATGAGTGCGATATATGTTGTCGAGGCTGTTCTTCAAGAATTAAAATTGAAGTGAAAATTTAAACAAAAATAAAAGAATTTAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014795:ENSRNOT00000020044:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]