MmuINT0110515 @ mm10
Intron Retention
Gene
ENSMUSG00000069171 | Nr2f1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:MGI Symbol;Acc:MGI:1352451]
Coordinates
chr13:78188973-78195689:-
Coord C1 exon
chr13:78195162-78195689
Coord A exon
chr13:78190014-78195161
Coord C2 exon
chr13:78188973-78190013
Length
5148 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTGTGGCTGCTCTGGCAGATG
3' ss Score
6.97
Exon sequences
Seq C1 exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTATGCACTCACAAACGGGGATCCTCTCAATGGCCACTGCTACCTGTCTGGCTACATTTCTCTGCTGCTGCGCGCAGAGCCCTACCCCACGTCGCGTTATGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCAGCCCGCCTCCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCGTTCTTCCCGGATCTGCAGATCACGGACCAGGTGTCTCTGCTGCGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCCATGCCCCTGCACGTGGCGCCGCTGCTGGCCGCAGCCGGCCTGCACGCCTCGCCCATGTCCGCGGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCTGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTATTCACGTCAG
Seq A exon
GTGAGGATGCGGTCGCGAGGAGGGCAGACTGTGCGGGGAGCTGGTGGGCATGGCGAGGCGAGTCCCTGGCATCCTGCAGCTCCCGCACCGCCGCTGTCGCTGTGAGGCCGGGCGCTCAAGCCACCTTGGGCCTGCCCAGGGTCTGCAGCCCGGGTATGTGGTTGTCGCCGACCGCGCCGCTGCCATCTTGGGAGCGTAGTGGTGCTTGGAGCGGAGGAAGCTCAGTGAGGCCAGCGGCCTGGCCTGATGGATGGCCTGGACCCAGCGCGCCCCGAGAGTGAGGCGACTGTGTGTCTAGGGAGGCAGGGCATTGTGGATCGTCTAGCTTCTGTGTGTGAACTCTCTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAGAGCTCGGTGTTTCTGTGGGAGGAACGATACAGAAGGAAGAAGAGAACGTGGGAAGGTGGCTTCCTAGTCTGTGTGGCACACTCCTTGGATGAGTTTCCCGACAGAGAGACACAGACAGAGGCGGAAAGGGAAGAATACGCACAAATAAATCATAAATAATCTCGCTTTATTGCTGCTTGATTTTCCCTTATCGGAAACCATTCATGTTTGCAGTTGCTGAGGTTATTGAGGGTCATAAAAAACGGATTCGATCTAAACAAGAAAGATAAAAAACAAAAGCAATACTGTAAAACCCGCAAGCATGAGAGCACTCCGGGCCGGGAGATAAATTTCATAGCTATGCAAACACACAAACACTAGAAATTTAAAAGGATGCCTTAAAATATCAAATTAAGTGTAGGCGGTGGTAGCATGCATGTTAACAATCTCTCTTATGATAGATGGTTCAAATTAACTTCCAGGAAAGTGCATTAACGTTGCCTTTGAAGGGCTCTGGTCTAAGCCTGTGAGAACACTATCCGCTTTTTATTATTGGAACCTACAAGAGGGAACTATATACACACTAGGGACAGCAGGTAACAAGGAAATACAAACAAAGCCAGAAAGAACTCTGCTTGGGCAGAGCTGCTTAGATGGATCTTGGGCTTTGCTCACTATAAGCAAGGTTAGTTGCAATTTTACCACCGTTATTGACACTATTGTTTTTAATTCCTAGATTAGGAGAACAAATAAACCATTCTAATAAATCTATCCTAGTCAGGCCCTCCAAAAGCCAAATTAAAACCATTCATGAGTGGAGATGGCAAAACTCTTTTTCCCAAGGCCTTGTTAAAACAGGAAGCAGTGGGATAATCTATCAAGATTTTTCGACTTCCATGCATGGAGAGTCATATTTACATTGTATTAAAATGACACTAAAATTTGCACAATATTGTAATGTAGCAAATGTAGTATTAATATCGATCTGAGCAGCAGATAATTTATTTAGATAAGAGCAGCTCATTTGTATGCAAGGTGGCTAGAGCCTTGGACTTGCCCCCTCCCCTTTTACTTTCAGTGCAAATGCAGGTCTGCTTGTGAGAGAGAGAGTCATTCTTTGCAAGGGTTTTAAGTGCAAAACTTAAAACAAATGGAAGATTTATTGAATAGCTTCCTCCGACTTTGAATGCATTTTATCTTAACAAGTCTTCTTGATGGAAATGTGTTTTTCAAAAGTGACAAAGAGCCTGGGAAGCAGTGAGCAGGGTCCTTTGACTCTGGCAGGCCCAGGCCTGGCTGGTGCACTCCTACCCATCGTTTAGCCAAATCCACCAGGAAGGGAGCCAGTGTGGAGAAGCTAGGGTTGTAAAATCCCACCCAGTGAAGTATCTTAAAGCAGAAGTGTGTGCCGGGGAATTGTACAGAGGTTTTCTCAGCAAAGGTCTCCCTTCTCTTTTCCTTATGCGCCTAAAGTTCTCCAAATACCCTTTACTTTGCTGGTCTTGTGCCATTTCCCAGAGAAAGAGAGTGGGGGAAGGCAGGCCTAGGATTGTGTGGGCTGCAGGGAACATTGTGGAATTATGCACCTTCACTTTTAAACTTTCCATCCTAAAACATTCCTGTGAAAAGTCCCTTCACTTAAAAAAAAAAAAAGTTTTCCAAAGGAGTTTTTTTGAACCAAGTCTCCAAGGTGCAAGGGATGCTGAGACATGAATAGTAACATTATTTTGTTGGAAAATCGCAGACAGAATATCTGAAAATGGAAATAAACCTATCAGTAGTAATTCACCCCCCTTCACCCACCCCCTTCCATACAGCACATTTCCACTTTTGACTAAACTTGTTTTGATTGCTAGCCAGAAGGGACTTCATTGGAAGAAGAGAATTCACGGGAAGCCTTCCCTACGCCATCCAACTTTTAAGAAAACTTTGAATGATGGAAAAGACAGTTTTAGACATATTGTCCAATATGGCTTGCTCTGGCTAAGTATTTGAAGCTGGCATGAGCATCCCCCGTGGTGGTTTTCACATTTGGCCTCCGGATGGTGTGTTTAATCCTTAATATTCTGGACATCATCCAAAGACTAGGTCATGACCTGAACTTACTTTGAAAAAAAATTCTTTAATTCATACACCTAAATATCCCTTCAAATAAATGAGACTGGCTCTGAAAAGAACCATCTAGTTAACATAAATACAATAAATCCATTTTCTGCACAAGAATAACTTTGATTTCTAGTTATGGCAGCTGATTACATCTATATTTCCTGAACACTAAACTCTTCTGAATGCACAACATGAAATATATTCTCTGCTCTACAAAGGCTAAACCGGGAGGGCCTGAGCAGTAATGGTTATTTATTTACATAATTTCTTCTCCTTATACTGTAGAAGAAATATTAAAGGTTCTCACATTGACAATACCATATAAAAAGTGAGACATGGGTTTTCTATGTTCTGTCTCCTTTTCTTATCTGGAGTATAATCCATGGGGGCAAATATGTACTAAATTACACCCTTTGCTCACCTCTCTTTACCATCACAACCCACCAATTGATTCAAACACTCATTCTGTCTGTCTACAGATGGGAGAATCCTGCTACTGGGGGGGAATGATTAAGTAGTGTGTGGAGGTGGGCCTGAACTAGGACTCACAATGATAAAGGCCATGGGCATAGGTGACTGGGATGATAAAGACCACCAGGGATAGGTGACTGGTACTTGAAGGGGCAGCCTCAGTCTCAGGCATTCCATTTCAAAGGTAGAAGGGCCTGAAAGCAGCCAGTGTAGGGCCAAAGTGTACCTGTCTAGACTTCTCTTTGGAGTTGTTTAAAGAATGAGGAAGTGACTTACTCCAGGGGTCCTGATGTTTTACTGATTTAAGAAGATGTCATATAGATATTTAAGGGAACATCTCATGTTGTCTTTCTCATATTGTGTTGTGTGTGGCTAAGACTATCCCCTTGGTGTGAGGGACAGAAAATGTATGCAGTGCAAGATATATGTAAATACATCACACACAAGTCTGTGTGATGGCCATTCAGCAAGTTTAGGCTAGAAAATGGGTCCAAGGGCTGACCTAAGAGTCCCCTATCTATGTACTAATGCCTCAAAGATGTGCTCCTGTCCTGGTCTTGCTGGCCATAATAATCCCTGGCATCCCAACTCAGACCAGTGTGGATGCACTGCACCAGCTGGATGCAGTAATTAGACATCTGAGAGGAACCCAGTCTGGACCTGGGGTCAAAGGAGACTTGCCTCTGAAGTTCTTGAATTATATCACCAGTTTTATTTAAATATTTGCTTAAGGCCATACCCTTGTAGATGAAGGTGGCAGAGTGCTTTGTGAAGCCTAGTTCTTGGACTGATACACAAAATGGAAACAGCAGACATAGATTTCGCTTTGAATAATTTGTTGTTTTCTTAGGGTCACACTTCCCCATTATACAATGTTCTGTTACAGGTGTTGTCATACATAAATTCCTTCCCAGATGTATATATTAGCAAGCGCTGTCTTTGATCTCTAGCCAACCTCCTGACTGGCTAAGGGTTCCTCTGTGATCTTCCTGTTTTTAAAATACATCTTACTTGTATTAAGAAGTAACATAGGAAATGAGGGAGAAGGGCCACTGTTTCTCTGATTCCACGCTCCTCTCCCTTTGCTTGGCCCTGGTTAGTGGATATAGGATAATCTGCTGTCTTGAAGTATTTTTAGATGACCCAAAAGAACTTTGGTTGGTTTGAAATAACCACAAAGGTTTTCAGTTGCCATTATTGTATAAAGTGCCTTGTGTGCTTCTCCCTTGGCCCCTGCTGTAGGAATCCTGTCTCCCCACCACCACATGCCTCCCAATTCCCTACACCCCAGTTCTGAGACAGAAGCCTCAGCTGCCTAGCTTTGTGTCTGATTGCTGAAGATGTTCCCTTCTGCAGCCTGGAGTAACTGAGCCATATTCCTCCTGGTTATTATACAGCTTACAGAGATGTGACCAATTTTCAATTACATGATCTAAGAAAGATAGAAGTGTCCACTCTCACCGAGGAGGATTTGTTGCAGGGCTCTGTCCTGCATATATAGTTGATCTCCAATTCTATATTGGTATAGCACAGGCTTGATCTGGTTCTCGGTTCTGCCAGCTTGTGATCCCCGATCCCCTGCCACGTGTATTCACTACACAATCTAGGTTCTCCTTGAGCTTGCTGGTTGGGGTCAGCTGGGTTGGGGGTTGGCGGGGGTGGGGGGAGACTCGAAGAAGCCTTTAAAAACTGTTTCCAAGGCTGTATATTTCTTCAGGGGTTCCAAGCACCCCAAAATCAAGCAGGAAAGGGGCAAATGCTTTCCTTTTAATGAGCACAACCAGAAATGTGCTCCCCTGAAGGAGAGAACAGGTCGCAGTACACAGCAAACATGGATTCACCATCATGCATTATTTAATCCAAAGGTGAAAGAGGGGAAACAAAGCTATGGCCAGGTTGCACCTCTGTGCATGTGCACCTCTCTCCTGGTCTCCCAAGCATGGTGAGGCTTGGATTTATTGTTATTTGTGTAGGGGGTGGGAAAGAGGATGGCAAAGAGGCATGGAGGGAAGGAGTTATTTTCCTTTTCTTCTATTTCTTTTTCCTTTTCCCCTCAAAATATTAATGGTGTGTATGCCTTTCCATCTCACTCACCTAACAATCTGTCCCCTTTCCCTGTCTCTCCCTCCTGTGGCTGCTCTGGCAG
Seq C2 exon
ATGCTTGTGGCCTGTCGGATGCTGCCCACATCGAAAGCCTGCAGGAGAAATCACAGTGTGCCCTGGAGGAGTATGTGAGAAGCCAGTACCCCAACCAGCCCAGCCGCTTTGGCAAACTGCTGCTGCGATTGCCCTCTCTTCGCACAGTGTCCTCCTCTGTCATCGAGCAACTCTTCTTCGTACGTTTGGTAGGTAAAACTCCCATCGAAACTCTCATCCGAGATATGTTGCTGTCAGGGAGCAGTTTCAACTGGCCTTACATGTCCATCCAGTGTTCCTAGACTTTGGGTGTTTCCCACCCAATCCTGCTCCCTGACTCCCTAGAGACTAAGAGGACTCTCCCTGACCAAGGACTAAAAAGCCTTTGGGGATGCTGGTATGATGGACCAGGCAGGCCAGGCAGACGGGAGGAGGGCTGGGAACAAGAGCAGCCCACTCTGCAGGAATGCAACCTGAGCTGCAAACCAGGAGAAAAGGAGACTCATTTAGGATCTGATCTGTAAGTACATTGGAAAGGAAAGAAAAAGGACCTCGTGTCTGGTGAGAAAATGAAAAAAAAAAAAAAAAAAAGAACGATTTGGAAGAGAGGACCATGAGAAATTTAATAAAATAGATGGACCTTCCAGGATTTATTGTGGATGGATGTGGATATATTCTGTACAGAAAACTACTCATATGGAAGTGGACTGAATCCTATGTAGAAACATACACTGAACATTGTTATTCATTTTGTAAAATACTAGTGTTTATTTTCATTTTTTGTAAAATTTAAACATCGTATGCGCATAAACAAAAATGAACAAGAATTAGGGGGAAATAACATTTTCCAAATAATTATAAAAAATTTGTCCTGTGTCTATGTATCTATATCTGTTTTGTATTTTTTCTGGTTCCAAACCAGATTTCCTGTGATTCTATACTAATAATTTTTGATATAACCCTTTGCTTCTTATAATGAGTGCGATATATGTTGTCGAGGCTGTTCTTCAAGAATTAAAATTGAAGTGAAAATTTAAACAAAAATAAAAGAATTTAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069171:ENSMUST00000091458:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types