BtaINT0103585 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017599 | NR2F1
Description
Bos taurus nuclear receptor subfamily 2, group F, member 1 (NR2F1), mRNA. [Source:RefSeq mRNA;Acc:NM_175804]
Coordinates
chr7:95457317-95464057:+
Coord C1 exon
chr7:95457317-95457844
Coord A exon
chr7:95457845-95462976
Coord C2 exon
chr7:95462977-95464057
Length
5132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCTGTGGCCGCGCGGGCAGATG
3' ss Score
4.65
Exon sequences
Seq C1 exon
CGGTTCAGCGAGGAAGAATGCCTCCCACTCAACCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGTTACGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTCCGCCTGACCTGGAGCGAGCTGTTCGTGCTCAACGCAGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCGCTGCTGGCCGCCGCCGGCCTGCACGCCTCGCCCATGTCCGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCGGCCGAGTACAGCTGTCTCAAAGCCATCGTGCTGTTCACGTCAG
Seq A exon
GTGAGGCTGCGGCCGCTGGGAGGGCCAGGCCGGCGCCGGGAGCGCCCGCCCGCCGGCCCCGCTCCGCGCCTCGGCTCCCCGGGCGGCCCGGGCCCTCGTCGTTCCGCGGGAGGCCGGGCCGAGCCCGGAGCCTGCGGTGCCCGCGCGAGGGAAGCGGCCGGTAGCGCCGCTGCCATCTTGGGAGCGCGGCGGTGCGGGAGGCGAGGCGGTGCGGCTGCGGGCCGCTCGGTGGCCCGGCTCGGCCCGGTCCGGCGGCCTGGAGCCCCACGCGGGGCGGCGGCGGCGGCGGCGGGCGCGTGTCTGGCCGGGTCGGAGTTGGGGGGGGGTGACGGGGAGGCGGTGCCGTGGATCCGTCTGGCTGCGCGCGTGTGTGCGGTGTGCATGTGTGTGCGATGTGTGTGCGCGCGTGTGTGCCTGAGCTCGGCGTTTCTGGGGGAGGAGAGGAAAGGAAGGGAACGTGGGAACGTGGCTTTCTCCTCTGCGTGGCACGGTCCCTGGCTGAGTTTCCCGACACAGTGAGACACACACACACGGAGAGGTGGCAAGAGAAGAATCCGTGCAAATAAATCATAAATAATCCCGCTTTATGGCTGCCTGATTTTCCCTTATCGGAAACCATTCATGTTTGCAGTTGCTGAGGTTATTGAGGGTCGTAAAAAATGGATTCGACCTAAACAAGAAAGATAAAAAACAAAAGCAATGCCGGAGAACCCGCAAGTATGCGAGGATTCCCGCCCGGAGATAAATCTCATAGCCCATGCGAGGCGCACGAACGTTGGAAATTTAACAGAGTGCCTTAAAAATATCAAATTAAATGTAGGCAGTGGTAACATGCATGTTAACAATTTCTCTTATGATAGATGGTTCAAATTAACTTCCAGGAAAGTGCATTAGCGTAGCCTTTGAAGGCTCTCGTCTGAGCCTCTGAGAACACTGCCCCCCTTTTATTATTGTAACCTGCAAGAGGGAAACATATAAACACCCAGGACAGCAGGTAATGGGGGGAAATATAAACAAAGCCAGAAAGGACGCTGGTGGGGAACAGAGCTGCTCAGACTGGGTCTCCGGCCTTGCCCACTGTGAGTAGAGTTAGCTGCCGTTTTTACCACCATTATTGGCGCTATTGTTTTTAATTCCTCCATTCAGAGAACAAATAAACCATCCTAATAAATCTATCCTAGAGCCAGGACCTCCAAAGGCCAAATTAAAACCATTCTTGAGTAGGGATGGCAAAACCCCTCTCCCAAGGCCTTGCTGAACAGTAAGCAGCGGTATAATCTATCAATATTTCCTGGCTTTCATGCGTGAAGAATCGTATTTACATTGTATTAAAATGACTCTTAAATTTGCACAATATTGTAATGTAGCAAATGTAGTATTAATATCGATCTGAACAGCAGATAATTTATTTAGACAAGAGCATCTCATTTGTATGCAGGGTGGCCTGAGCCGTGGACTTGGACTGCCCCCCTTTTACTTTCAGTGCAAATGCAGGTCTGCTAGTGGGAGAGGGAGTTATTCTTTGCAAGAGGATAAAGTGAGAACCTTAAAACAAATGGAAGATTTATTGAATCGCCTCCTCGGTGTTTGAATGCGTTTTATCTTAATAAGTCTTCTTGATGGAAACGTGTTTTTCAAAAGTGACAAAGAGCCTGGGAAGTAGCGACCCGGCTGCTTTAGTTCTGGCAGGCCTAGGGCCTGGCTGGCTCTCCACTACCCAGCTCTTTAGCCAAATTAATCAGGAAGCAAGCCAGTGTCGGGGAAGCTGGGGTTTTAAAATCTCACCCAGTGAGGTGTCTTGAAGCAGAAATGTGACTTGGAGCTGGACAGAGGTCTTCTCAAGCAAAGTCTCCCTCCCTTTTCCTTGTCCCCTCCTAAGGTTCTTTGAACCCCCTTGACTTTTCTGATCTCCTGCCCTTTCCCAGAGAGAGGCGAGGACCGTGCAGGCTGCAGGGAAGATTGTGGAATTATTCATGCTTTTCTTTCAACTTTCCATCCTAAAATGTCCCTGTGAAAAGTCTTCTTTTTTTAAAAAAAAGTTTTCCTAAAGACATTTCTTAAACCAAGTCTTCAAGGTGCAGGGGAGGCCGAGAAGTGAACAATGACATTATTTTGTTGGGAAAATTGCAAGAAGACTATCTGAAAATGGAAATAGAGCTGTCAGTAGTAATTCACCCCCCCCCCTCCATATAACACATTTCCACTTTTGACTAAACTTGTTTTGATTGCTAGCCAGAAGGGAATTCATGGGAAGCCTTCTCAAAGTCATCCAACTTTTAAGCAAACTTTGAATGATGGAAAAGACAGTTTTAGACATATTGTCCAACGAGGTTTGCTCCGGCTAAGTATTTGAAGCTGGCACGGGGGTTCCCTGTGGTGGTTTTCACATTTGGCCTCCGGATGGTATGTTTAATCCTTAATATTCTGGACGGCATCCAAGGACTAGGTCATGACCTGAACTTACTTAAAAAAAAAATTCATTAATTCATACACCTAAATATTCTCTCAAATAAATGAGACTTTCCCTGAAAGGAGCCATCTAGTTAACATAAATACAATAAATCCATTTTCAGCACAATAATAACTTTGATTTCTAGTTATGGCAGCTGATTACATCTATATTTCCTGAACACTAAACTCTTCTGAATGCACAACATGAAATACATTCTCTGCACTACAAAGGCTAAGCCGGGAAGGCCTGAGCGGTAATGGTTATTTATTTACATAATTTCTTTTCCATACACTGTAGAGGAAATATCGAGGGTTCCCACATTGACACTCCCATATAAAAAGCGAGACATGGATTTTGCACATTCTGCCTCCTTTTCTTATCTGGGGTATAACTCATGGAGTGTAAATATATACTGGATCTCACCCCCTGCTCATCTAGTTTTGCTGCCTCAACCACCTACTTGGTCTGAGAGCTCACACTATCACTCCACAGTTGGGGGAATCCTGTGGCAAAAATATATGGAGTAGGAATGAATATCTAGAGTGCAAAGCCAGACCCAGTCTAGGGCTTCTGCCCTGGAGGAGGCCACAGTGCTGGCCGGCTGGCACTTTGCAGCAGGGGCCCAGCTACAGGCATCCTACCTTCAAAGCAGGAAAGAACTCTGACAAGGAAGCCAACACAGGGCCCAGGCATGCCTTTCCAGCTCCCTGGGAGTTGCCTAGCTGGGGGACAGGTAGTGACCTTGCACACTGGGGGCCCTAAGTGTAAACATCAGATACATATTTTATAGATCCAAAGAGATGCCATGTGGGTCTTTAAAAAAAAAAAATCTGCTGGGGTGCCAGTGAGTCCCTTGCATGCTGCATTCTCTAAGGCTGAGTGGGATCCTGTGCCATAAGGGGCAGATAAAGCCTGTAAAGCAAGATATATGTAAATATGAGTCTGCCCAGGGGTCATAGAGCAGGATCAGGTTAGCCTGCAGAGCTAAGGGCAGACCTCAGGGTCCCCTCTCCAAGCACTGAAGCACCAAAGTGCTCCTGCCCTCAGCCTGTAGCCATAAAATCTCCCTGACTTCCCAAGTCAGGCTAGTGTGGATGCACCCGACTGGCCGGCTAGAGTCATTAGACATCTGAAAGGAACCCAATCTGGATCTGGGGTCAAAGGAGACCTGCCTCAGAAGTTCTTGAATTATCACTAGTTTTATTTGTATTTTTGCTCAAGGCCATAGCTTTGTAGATGAAGGTGTTAGAATGCTTTGTAAGTCCCAGTTCTTGAAATAGAGACATAAAGCTCAAGAAACTCAGCAGACACAGGTTCCTCTTTGAAATCATTCTCTGTGTCTTCTTTGGGTTACACTTGCCCATTCACAATTAGACAGAGTCCTTTGGGGGGGGGGGGCATCGCCATGCATTTCTTCCCAGATCTATCTATATATTAGCAAACTCCGTCTTTGATCTCTAGTCAATCTCCTGACTGGCTAAGGGCTCCTCTGTGATCTTCCTGTTTTTTTAAATATTTATTATTAATACAGGAAACAACATGGGTGTTTGAACTAGGAGAAGAAGCCTTCGCTTCCTCTGATTCCACCTTCCCCTCCACTGGCTTGCCTCTGATTCGTTGATACAGTATAAGCTGCTGTCTCAAAATATTTTTAGTAGACCAAGAAGAGCCGCTGGTTGACATGAGATTAAACACACAGGTTTTCAGACGTTTCCTTGCATATAAGTGCATTTTTCTCTCTTAGTCCTGTGACAGGAAGCCTGTCTCCCCAAATCCTCCTTCAGCCCCCACTGCCCAGTTCTCAAGCAGCAGCAGCAGCAGCAGCTGCCCCCAGCCCAGCTTTGTGTCTGATAGCTGAAGTTGTCTCCTTTCTGCAGCCTAAAGTAACTAAGCCATATTCCTTCTGATTATTATACAGCTTACAGAGATGTGACCAGTTTTCAATTACTTGATCTAAGGCACCGATAGAAGTGTTCACCCTCACTAAGGATTTGCTGCAGACCTCTTGCTTGCATAGATAGTGGATCGCAAATCCTATCTTGCTAAAGCCTGGACTTGATCTGATTGCAGGCTCTGCCAGCCTACAATTCCTTACCCCCTCCCATGCGTCTGATCACTACACAATCTAGGTTCTCCTGCTTGGGGTCGTTTGGGTTTGAGAGAGGGACTCCCAAGAAGTGTTTCAGAGCCGCCTCCAGGCTGCATATTTCTTCAGGGCTCCTGGACACCCCAAAAATCCGGGGCAAAGGGGGCAGAAGTCCTTCCTTTAATGAGCACAGCGGAAAAGATGCTCCCCTGCAGGCGGAGGCCAGGTTGCTCCGTGTAGCAAACATGGCTCCAGCATCGTACATTATTTAACCCAAAGGTGAAAGAGGAAACACAAAGGAACTAGAGAGAGTGTGTCTGCAAGTGTGCGCTCCTCTCTTCGGCTCCCCTAGGCATGGTGGGGATTTGATTTATATTTTTATTGGTCTTGGGGGCTGGGGGGAAGGAAATAGGGAAGAAGGAGTAGGGAGCCACGGGGAGGATTTTTCTTTTTCCTCCAATTTGTTTTCCCCCCCTTTGCTTCTTATTAAAAAAAAAAAAAAAAAGGAATGGCGTGTTGTCTGTGACCTTGCTGGTAGCTGACCTAACCGTGTGCCCCTCCCCTGGTCTCTCCTTGCTGTGGCCGCGCGGGCAG
Seq C2 exon
ATGCCTGTGGCCTGTCGGATGCGGCCCACATCGAAAGCCTCCAAGAGAAGTCGCAGTGCGCGCTGGAGGAGTATGTGAGGAGCCAGTACCCTAACCAGCCCAGCCGCTTCGGCAAACTGCTGCTGCGGCTGCCCTCGTTGCGCACCGTGTCGTCCTCGGTCATCGAGCAACTCTTCTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACTCTCATCCGCGACATGTTACTATCCGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAGTGCTCCTAGACCTTGGGCGCTTCCCACCTGCCCCCAGCCCCTAGAGACTCACAGCACCGGCGGGGGGCCGTGGACTCCAAAGCCGCGGAGACACCAGGCGGCCGATGCTGGGTGCGGCAGGGCCGGGCAGGCGGGGAGGAGGGCCGGGGGGGCGACAGGAGCCGCCCACCGCGCAGACAGGCAAACCGAAGCTGCAAACCTGGAGAAAAAAAAAAAGAGAGAGAGAGAGAGACTCATTTTAGTATCAGATCCGGGAATACGTTGGAAAGGAAAGAAAACAGACCCTTGTGTCTGGTGAGAAAAAGAAAACCAATTTGGGAAGAGAGGACCATGAAAATTTTAATAAAACAGAAGGAGACTAAAGGACCTTCCAGGATTTATTGTGGACGGATGTGGATATATTCTGTACAGAAAACAACACCCATGAAAGTGGACCGAATCCTATGTAGAAACACACACACAGACACACACACCACACACACACAGACATTGTTATTCATTTTGTAAAATACTAGTCTTTATTTTCATTTTTTTGTAAAATTTAAACATCGTATGCACATAAAAAAAGAAACAAGAATTAGGGGAAAATAACATTTTCCAAATATAAAAAAAAATTGTCCTGTGTCTATGTATCTATATCTGTTTTGTATTTTTTTCTGGTTCCAAACCAGATTTCCTGTGATTCTATACTAATAATTTTTGATATAACCCTTTGCTTCTTATAATGAGTGCGATATATGTTGTCGAGGCTGTTCTTCAAGAATTAAAATCGAAGTGAAAATTTAAACAAAAAATAAAAAGAATTTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017599:ENSBTAT00000023401:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]