HsaINT0115618 @ hg38
Intron Retention
Gene
ENSG00000175745 | NR2F1
Description
nuclear receptor subfamily 2 group F member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
Coordinates
chr5:93587917-93594615:+
Coord C1 exon
chr5:93587917-93588444
Coord A exon
chr5:93588445-93593561
Coord C2 exon
chr5:93593562-93594615
Length
5117 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTGTGGCTGCTTGGGCAGACG
3' ss Score
3.69
Exon sequences
Seq C1 exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCCGAGCCCTACCCCACGTCGCGCTACGGCAGCCAGTGCATGCAGCCCAACAACATTATGGGCATCGAGAACATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCTATGCCGCTGCACGTGGCGCCGTTGCTGGCCGCCGCCGGCCTGCATGCCTCGCCCATGTCTGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTCAAGGCGCTACACGTCGACTCAGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTGTTCACGTCAG
Seq A exon
GTGAGGCTGCGGTCGCGGGGAGGGCAGGCCGCGCCGGCAGCGAGCGCAGGCCCCGCGCCGCCCGGGCCTGGCCTTCGGAGCCTCCCGCGCGGCCGGTGCGGGGCGGGCCGGGCCCTCGCTGGACACTGAGCCTGGCCCGGGTCTGTGACCCCCGCGCGGTGACCGGCTGGCCGCGCCGCTGCCATCTTGGGAGCGCGGCGGTGCGGGAACCGAGGCGGCGCGGGTGCGGCCGGCGGGCGGCCGGGCCTAGTCGCCCGGACCCCTACGTGGGGCCGCGGCTGCCGAGGGTGTGTGTCTGAGGCGGGGGGGCGGTGCTGTGGATCCGTCTGGCTGCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTCTCTGTGTGTGTGTCTGTGTGTGGTGCGTGTTATGTGTGAGCCAGAGCTCAGCGTTTCTGGGGGAGGCGAGGGAAGGAAGAGAACGTGGGAATGTGGCTTCTTACCCTGTGTGGCACTCTCCTTGAATGAATTTCCCGACACAGAGAGACACAGAGAGAGGTGGAAAGAGAAGAATACGCACAAATAAATCATAATAATCCCGCTTTATCGCTGCCTGATTTTCCCTTATCGGAAACCATTCATGTTTGCAGTTGGTGAGGTTATTGAGGGTCGTAAAAAACGGATTCGATCTAAACAAGAAAGATAAAAAACAAAAGCAATGCTGTAGAACCCGCAAGTATGGGAGGATTCCCCGCCTGAAGATGAATTCCAAAGCTATGCAAAACACATGAACACTGGAAATTTAAGAGTGCCTTAAAAAATATCAAATTATGTGTAGGCAGTGGTAACATGCATGTTAACAATTTCTCTTATGATAGATGGTTCAAATTAACTTCCAGAAAAGTGCATTAACGTTTCCTTTGAAGGGCTCTGGTCTGAGCCTCCGAGAACAATCCCCGCTTTTTATTATTGTAACCTGTAAGAGGGAAACATATAAACACCCAGGACAGCAGGTAATGGGGAGAAATAGAGACAAAGCCAGAGAGGAGGCTGGTGGCAAGTAGTGCTGCTTAGACTGGGTCTTGGGCCCTGCCCACTGTGAGTAGGGTTAGCTGCAGTTTTACCACCATTATTGGCAGTATTGTTTTTAATTCCTCCATTCGGAGAACAAATAAACCATCCTAATAAATCTATCCTAGAACCAGGCTTTCCAATGGCCAAATTAAAACCATTCTTGAACAGGGATAGCAAAATCCCTTTCATAAGGCCTTGTTGAACAGTAAGCAATGGTATAATCTATCAATATTTCTTGGCTTTCATGTGTGAAGAATTGTATTTACATTGTATTAAAATGACTCCTAAATTTGCACAATATTGTAATGTAGCAAATGTAGTATTAATATCGATCTGAACAGCAGATAATTTATTTAGACAAGAGCATCTCATTTGTATGCAGGGTGGCCAGAGCAATGGACTTGGACTGCCCCCCTTTTACTTTCAGTGCAAATGCAGGTCTGCTAGTGAGAGAGGGAGTTATTCTTTCCAAGAGGATAAAGTGCAAACCTTAAAACAAATGGAAGATTTATGGAATAGCCTCCTCCGTATTTGAATGCATTTTATCTTAATAAGTCTTCTTGATGGAAACGTGTTTTTCAAAAGTGACAAAGAGCCTGGGAAGCAGCAACCAGGCTGCCTCAGCTCTGGCAGGCCTGGGGCCTGGCTGGCTCTCTACTACCAGGCTCTTTAGCCAAATTCATCAGGAAGCAAGCCAGTGTCAGGGAAGCTGGGGTTTGAAAATCTCATCCAGCGAGGTGTCTTGAAGCAGAAATGTGACTTGGAACTGGACAGACGTTTTCTCAGGAAAGGTCTCTCCTCTCTTTTCCTTACACCCCCTAAGGTTCTTTGAACCCCCTTGACTTTGCTAATCTCATGCCCTTTCCCAGAGAGAGGTGAGGACTGTGCAGGCTGCAGGGAAACACTGTGGAATTATTCATGCTTTCCTTTTAACTTTCCATACTAAAACATTCCTGTGAAAAGTGTTCATTTAAAAAGTTTTCCAAGGAAGTTTCTTGAATCAAGTCTTCAAGGTGCAAAGAGTGCCTAGAAATGAACAATAACATTATTTTGTTGGAAAATTGCAAGCAGAATATCTGAAAATGGAAATAGAGCTGTCAGTAGTAATTCACCTCCCCCCTCCCATGCAACACATTTCCACTTTTGACTAAACTTGTTTTGATTGCTAGCCAGAAGGGAATTCATGGGAAGCCTTCTCAAAGTCATCCAACTTTTAAGCAAACTTTGAATGATGGAAAAGACAGTTTTAGACATATTGTCCAATGTGGTTTGCTTTGGCTAAGTATTTGAAGCTGGCACGGGGGTCCCCCGTGGTGGTTTTCACATTTGGCCTCCGGATGGTATGTTTAATCCTTAATATTCTGGACTGCATCCAAGGACTAGGTCATGACCTGAACTTACTTTTTAAAAAATTCATTAGTTCATACACCTAAATATTCCTTCAAATAAATGAGACTTTCTCTGAAAGGAGCCATCTAGTTAACATAAATACAATAAATCCATTTTCAGCACAATAATAACTTTGATTTCTAGTTATGGCAGCTGATTACATCTATATTTCCTGAACACTAAACTCTTCTGAATGCACAACATGAAATACATTCTCTGCACTACAAAGGCTAGGCCAGGAGGGCCTGAGCAGTAATGGTTATTTATTTACATAATTTCTTTTCCATACACTGTAGAAGAAATATTGAGAGTTCCCACATTGACACTACCGTATAAAAAGTGTGACATGGATTTTGCACATTCTGCCTCATTTTCTTATCTGGGGTATAACTCATGGAGCATAAATATATACTGTATTACACCCCCTGGTCACCTAGCTTTGTCACCACAACCCCCTAGTTGATCTGGGAGCTCATACCTTCTGTCCACAGTTGAGGGAATCCTGTTGCAAAGGGGTGAATGAATTTCCAGACTGGGAAGCCAGGCCAGAACCAGGGCTCCTGCCGGAGGGAAGCCACAGAGCTAGCTGGCTGGTACCTGGCAGGCAGGCCCAGCTACAGGCATTCACCTCCAAAGGAGGGAAGAAATGGAAGCAACCAGCACAGGACCCAGGCAGGCCTTTCCTGGGCTTCTTGTCTCTCTTGGAGCGGCCTGTTTGGGAGTTGGGAAGTGACCTTGTACTCCAGGGACCCTAATCATAAATGTCAGATAGATATTTTACTGAGCTGAGGGGATGCCAGATGGATCTTAAAAAAAAAAAATCTGCCGGGATACCAAGGGGCCCTTTTCACATTGCATTGTCTAGGGCTGAGAATGATCCATAAGCATGCAGGCAGATAATGCATGTAAAGCAAGCTCTATGTAATTATGGGTCTGGGTCTGAGTGAGGGTCATTCATCAGGGCCAGGTTAGCAAGCAGGGCCAAACTCACGGTCCCCTCTCTAAGCAGCAAAGCCCCACAGAGCTCTTGCTGCCCTGGCCCTAATAGCCATAAAGTCTCATTTGGCTTCCCATATCAGACCAGTGTGGATATACCCAACTGGCTGGCTGGAGTAATTAGACATCTGAGAGGAACCTAGTCTGTATCTGAGGTCAAAGGGGACTTGCCTCAGAAGTTCTTGAATTATCACTAGTTTTATTTGTATTTTTGCTCGAGGCCATAGCCTTGTAGATGAAGGTGTTAGAATGCTTTGTAAATCCCAGTTCTTGAAATATAAGGTCATAAAGCTCAGAAACTCAGCAGACACAGGTTTCACTTTGAATCATTTGTTGTGTCTTCTTAGGGTCACACTTGCCCATTCAAAATTATACAATGTCATTTTGGGGGCATTGCCATGCATCAATTTTTTCCCAGATCTATATATTAGCAAATTCTGCCTTTGATCTCTAGTCAACCTCCTGACTGGCTAAGGGCTCCTCTGTGATCTTACTGGTTTTTTTTTAATATTTATTATTAATATAAGAAACAAGTGGGTATTTGAACTAGGAGAGGATGCCTTTACTCCATTCCTCTTATTCCATCTTTCCCTCCCTATGCTTGCCTCTAGTTAGTTGATATAATATAATCTGCTGTCCTGAAATACTTTTAGAGGACCAAGAAGGGCCTTGGTTGACATGAACTAAGCACACAGATTTTGAGGTGCTGTCATTGTGCGGAGGTGCCTTTTTCTCCCTTGGTCCTGCCACCAAAAGCTTATCTCCCCCCAAGTCCCCCCTCAACTCCCCACCACCCACATCCCCCCCTACCCCCCCAGTTCTGAAGCAGCAGCAGCTGCTGCCTGTAGCCTAGCTTTGTGTCTGATTGCTGAAGATGTCGCCTTTCTGCAGCCTGGAGTAACTGAGTCATATTCTTCCTGATTATTATACAGCTTACAGAGATGTGACCAATTTTCAATTACTTGATCTAAGGTATAGATAGAAGTGTACACCCTCACCAAGGATTTGCTGCAGAGTCCTTTCTTGCATAGATAACGGATCTGAAATCCTATATTGCTAAAGCGTGGGCTTCATCTGATTCCAGGCACTGCCAGCCCATGATTCCTTACCCCCTCCCATGTGTTTGTTCACTACACAATCTAGGTTCTCCTGGAGGTTTCTGGTTGGGGTGGTTTGGGTTTGAGAGGGGACTCCAGGAATCCTTTAAGAACTGCCTTCAGGCTGCATATTTCCTAAGGGGTACTGAACACCCCCAGATCAGAGGCAAATGGGGCAAAAGTTAATGAGCACGGCCAGAAAGATGCTCCCTTGCAGGCCGAGGACAGGTTGTTAAGCGCAGCAAACATGGTTCCAGCATTGTACATTATTTAATCCAAAGGTGAAAGAGGAAAAACAAAGGGACTAGAGAGGTTTCTGCCTCTGCATGTGTGTGCCTCTCTCTCCAGCTCCCCTAGGCTTGGTGGGGGTTTGATTTATTTTTATTTGTATTGTATTGGGGGCGGGGGAGGAGGGAATGAAGAAGGGGATGGAGAGGTATAGGAGGGTGAATTTTTCTTTTCTCTTTTACTTCTTTTTTATTTTCCATTTTCTCCTTAAAAAAAATTGATGGCTTATTTTGCCTTTGCTATTTGTCAGCCTAACCGTGTGCTCCCTTTCCCTGTCTCTCCCTCCTGTGGCTGCTTGGGCAG
Seq C2 exon
ACGCCTGTGGCCTGTCGGATGCGGCCCACATCGAGAGCCTGCAGGAGAAGTCGCAGTGCGCACTGGAGGAGTACGTGAGGAGCCAGTACCCCAACCAGCCCAGCCGTTTTGGCAAACTGCTGCTGCGACTGCCCTCGCTGCGCACCGTGTCCTCCTCCGTCATCGAGCAGCTCTTCTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACTCTCATCCGCGATATGTTACTGTCTGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAGTGCTCCTAGACCTTGGGCGCTTCCCACCTGCCCCGTCCCCCTAGAGACTCAGAGGACCCACCTGGGCCAAGGACTCCAAAGCCGCGGGGACACCGGGAAGTGCAGCGGGCCAGGCAGGCTGGGTGGGAGGGAGGAGGGCCGAGACAGGAGCAGCCCACCCAGCAGAAATACAATCCGAGCTACAAAGCATGGGAAAAAGAGACTCTTTTAGGATCAGATCTGTGAGCACGTTGGCGAGGAAAAACAAAACAAACAAAAAAAAGAACCTTGTGTCTGTCTGGTGAAAAAAAGAAAAACAAATTGGAAGAGAGGACCATGAGAATTTTAATAAAACAGAAGGAAACTAATGGACCTTCCAGGATTTATTGTGGACGGATGTGGATATATTCTGTACAGGAACAACACATATGGAAGTGGACTGAAGCCTATGTAGAAACACACACACACTGAACATTGTTATTCATTTTGTAAAATACTAGTCTTTATTTTCATTTTTTGTAAAATTTAAACATCGTATGCGCATAAAGAAAAAGGAAACAAGAATTAGGGGAAAATAACATTTTCCAAATAATTATAAAAAATTGTCCTGTGTCTATGTATCTATATCTGTTTTGTATTTTTTTCTGGTTCCAAACCAGATTTCCTGTGATTCTATACTAATAATTTTTGATATAACCCTTTGCTTCTTATAATGAGTGCGATATATGTTGTCGAGGCTGTTCTTCAAGAATTAAAATTGAAGTGAAAATTTAAACAAAAATAAAAGAATTTAGCAAAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175745:ENST00000327111:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development