GgaINT1020332 @ galGal4
Intron Retention
Gene
ENSGALG00000004767 | ODF2
Description
outer dense fiber protein 2 [Source:RefSeq peptide;Acc:NP_001012817]
Coordinates
chr17:5121978-5122898:+
Coord C1 exon
chr17:5121978-5122087
Coord A exon
chr17:5122088-5122762
Coord C2 exon
chr17:5122763-5122898
Length
675 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAAA
5' ss Score
2.54
3' ss Seq
ATTTTCTTTCTGCATGGCAGCCG
3' ss Score
7.48
Exon sequences
Seq C1 exon
GACAGTTACGTTGCAGAGGCGCTTTCTACCCTGGAGTCTTGGAGGAGTCGCTACAACAAAGTAGTGAAGGATAAGAGCGACCTTGAGTTGGAGATGGTTACAGTGAACAG
Seq A exon
GTTAAAACAAGATCAGTATGGAGAGAGTAACATGAGTGTGAATGAGTTCGTAGTTCAAGGGTGATTTAATTGAATGCAGTGATTAAAATCATTTGAGTTGTCAGTAAACATCCAAGCAAAACCAGCCCTGTCAGTGGGGTAGCAGAGTTTGGAGGGATCAAGACATAACGATGTGGCTTCTGTTGCTGACTTGCCACAGCAGAGGTGGGCTGTAAGGGTTTGCTCAAGCTTAAATCTCTCTGATCCTTTGCCCTTTCCAATGTTTTTAAATAATGAGGGATTTATTTCTTTTGAGATGTTTGAGATCCTTGAATGAAAGGGATTCGCTCATGGCAGTTTTGACATGATAGTAAATAAATGTGTATCACTGCAGTACGGTTGTTGCTGCAGGAAAAAAAATACGTATGGATATGAGATAAGTATCTCTTTATGTGTGTATCTCTTGGTGTGTATCTTGGAGGCAATGCATTTGAGTTCCAGGGGGACAACTCAGGTTGGTTTTCAGTGAGCAAAGAAGATTGAGGTAGCTGACCAGAATGTGGTAGATATGTATGTGTGAATAAAGCAGGAGGATGAAGGAGTAGTGAAAAGCCATGTCTCTGAAGCTAATATTGAAGAATTAGGAGTCTTATTCTTTCTTGTCATTTAAGGGTTAATTTTCTTTCTGCATGGCAG
Seq C2 exon
CCGTATTGCAGATTTGCTTGAACAGCAGGCAACCCTGGAGGACAAGATGCGAGAGGACAGAGATGCCTTGATGGATAAATTGCATCAACAAACTACAGAGACCACTTCTTTCAGAATGGAGAATGAAAGACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767:ENSGALT00000007603:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTTACGTTGCAGAGGCG
R:
CTTTAGTCTTTCATTCTCCATTCTGA
Band lengths:
246-921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]