RnoINT0105047 @ rn6
Intron Retention
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8476836-8479555:+
Coord C1 exon
chr3:8476836-8476945
Coord A exon
chr3:8476946-8479419
Coord C2 exon
chr3:8479420-8479555
Length
2474 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
CCTGTCTGCTGATCTTCCAGCCG
3' ss Score
8
Exon sequences
Seq C1 exon
GACCTTTATGTTGCTGAAGCTTTATCTACTCTGGAGTCATGGAGGAGCCGTTACAACCAAGTTGTGAAAGACAAAGGAGACCTTGAGTTGGAGATCATTGTCCTAAATGA
Seq A exon
GTATGTCTTTGTGTTAAGAGAGAAGACAGAATGAGGGAAGGGCTTGAGGAGTGGGTGGAAGGAACATGGTGCCCCGAGGTCACAATGCTCAGGAGGCTCTTATGGTCTCCTCAAGTTGGAGTTGTAAACTACACTAAGATGTGGCAGCCCTGTGCCAAATTCTGGCTCTACCTCTGGGTTTCTACTCCACTTGCCTAGCATGTGAGAGACCCTGGTCTCCATCCCTTGAACTTGAAACAACCGTAAGTATGCTCAAGGGAGAAGCTTCCCCATCATAGAGGCCCAAGCCTGACCCTAGTTATACTTGGCCCTAGTTTCTGTAGCAGGACATGGGGACACAGTTGTCATGCTTGATCATGGCGTCCCAGTGTGCTCTCCACTGGCTGCCCAGAGCTTCCTGCCAGCAGGTCAAAGTGAAGGCAGGTAGGCAGAGGCAGCCGAGCCTCCAGGGTTGGATGACTGACTTTGGCCCTCTTTCTTTGCCACTGGTGAATGTCACTGACCACCCGACTGTTCTCAGCCTCAGTCGTCTGGTTCTGTGCTGTGAGAGTGCACCTGGAGTGACTCTCATATAGCAGCTGTGTGCTAGCTCGGAGGATTCAGCTGCAAGAGGACATGTGTATTTCCTGTCCTGAGCTCCATGCGAGCTCCCGGGGCTGCAAGATGCACAGGCTTCTTTGGCAAGAGATGGGGCTCACAGGGAACTTGCAAGCCTTTAGACCAGTTCACCATGCACAGGCCGAGAATCCGCCATGCACTGTGTGCTGTTCACAACGAAGTTTAGTGGGAGAAGAGGGGAGAGGGAAGGTGTAAGGGTGCATGGAACAGATGAGGGGTAAAGAAGTAACATCCTCAGGAGGGCAGTCTGTACGCATCACCTGTCAATAAGAAAGCCTATGTCCAATGAGTTGAGGCAGCAAACAGGAGGTAGGACACTGGCAGGAAGAGAGGATTCTGGGAAATAATGTGAGGTTGAGGAGATTCATCCTGGAGATGGACATAAACCAGCAGGTAACTGATGTCAGGAGAGAATAAAGGGGAAATTCACGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCGCTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCGGCAACCACATGGTGGCTCACAGCCATCTGTAATGGGATGTGATGCCCTCTTCTGGTGTGTCTGAAGAGCTACAGTGTACTCACATATATACAATAAATAAATAAATCTTTAAAAAAAAAAGATTCACCCTGGAGATGGAGGCCTAAAGTTAAGGAGGGGTAACTAGTTATGTGGAAGACAGAATAGTTTGAATGGGTTAAATAAGTTATGAGCTCGTCAGGGAAAGAGCCAGAGCTTATGGCTTAGGCATATTTTAATAATTAGTCTTAGAGATGTCATTTTGGAAGCAGGGGTAGGAAAGAGGAAAAACATTTTATAGGCGTCTGGTGTGGGCTCTAAAGGGTGAGTAACATATTGCTAGGTGAGATGCTGTGCACTGGCTTGGCCCAGTCGGTGCTTCACCCAACGTGTGCTAAATTGCCGTCTTTGAGAACACAGCTGGGTTACAGCTCAGTGGAACACTTGGCTAGTACGTGAGAAGCTCTGGACTGTGTCTCCTGAACTCCAAGACCCCAAGTGATTATAATAATTTTTAAACCTCCAAGCAGCTGAGCAATGGTGGCACACCTTTACTCCCAGCACTAGAGAGGCAGAGGCAGGTGGATCTCTAGTTTGAGGCTAGTCTGGGCTATACAGCAAGTTCCAGTCAGCCAGGGCTACACAGAGAAAACTTGTCTCAAAAAAACAAAACAAAACAAAAACCTAATCCTCCAAGCAGACAAACCCTCATAGAGTAAAGACTGTGCACAGGTCGTGGTGGTGTGAAGTTGAGGTGAGTGAGCATCTGAGCCGTGGGATTCGAGCGCGGTCCACTGACCTCAGCGACAGTCCTGAGAGGCCACAAGGAAGGGAACGTGAGCAGGAAGCCTCACACGAGCTGCTTGGCTCCCTCACTGTCACTTGAGCATAGTCGCCGAGCTTCTTCCTTTGGCTAGCCATAGGAACATGGGGACAAAAGCCACATGCGCCCAGTGCCTTGGGGTGAGGACTGCCTGAGTAGCCCTTACTGACCACCAACCTGGAAAACGAGGGAAAGATGGCAAAGGGATGTGTTGTAACACTAAGGAAGGACAGGAGGTGTGTCTGCTGTGCTGAGTTGGGAGGGATTGGGTCTCAGCCTTACACACTTACAGTTACCCTGGCGAAATGGTAGACAACTTCCAGAGAAGGTGTCAAGGGAATGTTTTCAAAAGGCATCATGTGGAGATGGGACACTGGTGTGGGGTGGTGGGATGACTTCTTTGTGTAGAGACTGGGGCAGGTAGGCAGCGTGCTGTGAGGGGGAAATGGTCTTTGTTGGGGGTGGACTCCATTCCTTTAAAGATCTAGGGATTAACCCTGTCTGCTGATCTTCCAG
Seq C2 exon
CCGGGTGACAGATCTTGTAAACCAACAACAGAGCTTGGAGGAGAAGATGCGGGAAGACCGGGACAGCTTGGTAGAGAGACTGCACCGGCAAACTGCTGAGTATTCTGCCTTCAAGCTAGAGAACGAGAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584:ENSRNOT00000020073:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.413
Domain overlap (PFAM):
C1:
PF115593=ADIP=PU(6.6=21.6),PF0003816=Filament=PU(2.0=8.1)
A:
NA
C2:
PF115593=ADIP=FE(38.8=100),PF0003816=Filament=PU(31.4=95.7),PF121283=DUF3584=PU(12.2=41.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]