HsaINT0117813 @ hg19
Intron Retention
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131247644-131250304:+
Coord C1 exon
chr9:131247644-131247753
Coord A exon
chr9:131247754-131250168
Coord C2 exon
chr9:131250169-131250304
Length
2415 bp
Sequences
Splice sites
5' ss Seq
TGAGTACGT
5' ss Score
4.8
3' ss Seq
TTCACTTTGTGATCTTCCAGCCG
3' ss Score
8.41
Exon sequences
Seq C1 exon
GATCTTTATGTCGCTGAAGCTTTATCCACTCTGGAATCCTGGAGGAGCCGCTACAACCAAGTTGTAAAAGAAAAGGGAGACCTTGAGCTGGAAATTATTGTCCTGAATGA
Seq A exon
GTACGTCTTAGAGTAGGAGAGGGAATGTGGCGCTGTTGAGGGACTTGGGTGTGCAGGTGGGAGGGGCCTAGTGGCTCAGGGAAGGCCACGTGGCTGCTGTTTGTACTCTCCGGGTTGGGGGCTGCACTGGGCTGTGATGTGGGTAGCCCTGAGCTGGGCTTTCTGGTTGGAGCTGGGGTGCAAGCTCTGGCCCTAGTCCTGGGGTCCTACCCTACTGTCAGGCACTGGCTAGGGGCCGGGTCTTTCTGGTCAGAGGTGTGGGTCTGACTTCATCACCTGGGCCTGATCCTGTCCTCAGTCTACACAGCATTTGAAATGGGCACCGTGGTGTCCTCATTCCTATTGGGGAATGGGGCAGATGGTGACCCGAGTGTCTTCTCTCTGTTGTCTGTCCAGGGACAGCAGCTGTTTGCCAGTGCCTGCCAGTCAGTAGGTCAGTGGTATGGCATGGGAGTAGGGGGCAAAAGTGGCCTCAATTTGCAAGTGACTGAGCTGACACCTTTCTTGCCACTGGCGAACTGTGAATAGTGACCATTCCATCATTCTCCTTTTTTCCTTCATTTATTGGAAAAACATATATTGAGCATCTACCATATACCAAGCTGCTGTGTGCTGGCCACCAGGGTTACAGCAGTAAGAAGACAAATGCATTCCCTGCCCTCTACTCTGTAGAGGAGATAGGGCTACAAGAGGCATGGACTCCCTGGACTAAGGATAGGTCATGGGGGAGCTCATTTAATCTCCCAGGTCAGGAAAGTCTCTTACTGTATTCAACTCAACTTAGCAAACATGTTCTGAGAACTCACTATGTGCCAGGCTCTATGCCAGCTGCTGTCCTTAGGGAGTTCTCTGTCTAGTGGGAGAACATAGATACCTAAGACAGAAGCATACATGGTACAGGGGAGGGGTCAGGGACAAGATGTCTTGAAGTCTGAACTGGGTTTTTAAGTGTGAGTAGGAGTTTGCCAGGTAAACTGGAGTTGCCAGCAAACTGATATGTTTGCTTGGGCCTAGTCAGTGTTCAGTGGTGGACTGTAATTGGTCAATACTGAGAGCACATATTGTGCAAAGGGTTTTTGATGGGTCTGTGGTCAAGATAGAGGAGTAAGCACCTGTGAGCCCCAGGGCTCCTCTTGAGGCCACAGTCTCTGCTCTTTGACTGATGATGGCCTTGCTGAGTGACTGAGGCAGCAGCAGGGAGCAGAAGGGACTGGGGGTGGGGCAGGCAGCTGGCTTCTAAGTTGGCGTCTTTCTATTTGTGCCTTTTTCCCACACCACACTCATTGCCGTTCCTGCCTGTGTTAGGTGAGTGTTCATATGTGAATGAGCAATCATGGCACCAGCCCCCTGCTGGGGGTACAAAAGCCCAGGGTGCTCAGGGCCCTGCTGGAGAGGAATGCCTGGGTGATAATCCCTGACCACCAGCCTGGGAGTCCAAGAAGGGATTCCAGAAGCGTCTGTCCTAACACCAAGACCTGATAGGCAGAGAGATTCCAGGAGGTGTCATAGGGAGTTGGGAAGGGATCATGTCTCTGGTCCTTGCCTTCAAAGGGTATCTTGGCCTTATGAGAGGATCAAGATGGGTACACATCCCTCTCTCTCTCTCTCTCTTTTTTTTCTTAATGGAGACAAGGTCTTGCTCCTTCACCCAGGCTATAGTGCAGTGGCACCAGCATAGCTCACTGCAACCTTCAACTGCTGGGCTCAAGCAATCCTCCCACCTTGGCCTCCCAAAGCACTGGGATTACAGGTGTGAGCTGCCACACCCAGCCCACACTTCTCTTAATAAGTCATTGCTTATTGTTGAATTGTAGATGGTTTCTTGGAGGGGGAGGTATGGGAGACACATCTTAACGGACGTCGTTCAGAGGTGGGACAGGCATGGGAGTACCACAGCAGCAATGCCAAGGCAGGGCAGCAGAGTTGCTTCTCAGTGTGGAGATTGGGGAGCAGGCAGGCAGTATATTGAGTGATGAGAACGCTGGGTCCCACACCACACAAAGACCTGGGTTCTTTAGAACCTGTGTAATTGGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCATTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAGAACTTAGCCGGGCGTGGCGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACACGGGAGGCGGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTAGGTGACAGAGCGAGACTCCGTCTAAAAAAACAAACAAACAAAACACACACACACACACACACACACACACACAAACAAACCTGTGTAATTGATTCTCTCTGTCTGCTTTCACTTTGTGATCTTCCAG
Seq C2 exon
CCGGGTAACAGATCTTGTAAACCAACAACAAACCCTGGAGGAGAAGATGCGGGAAGACCGGGATAGCCTGGTGGAGAGACTACACCGTCAGACTGCTGAGTATTCCGCATTCAAGCTGGAGAATGAGAGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-ODF2:NM_002540:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.391
Domain overlap (PFAM):
C1:
PF0003816=Filament=PU(2.1=8.1),PF115593=ADIP=PU(0.9=2.7)
A:
NA
C2:
PF115593=ADIP=FE(39.1=100),PF0003816=Filament=PU(29.7=89.1),PF121283=DUF3584=PU(11.9=41.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)