MmuINT0112701 @ mm10
Intron Retention
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29915208-29917745:+
Coord C1 exon
chr2:29915208-29915317
Coord A exon
chr2:29915318-29917609
Coord C2 exon
chr2:29917610-29917745
Length
2292 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
CCTGTCTGCTGACCTTCCAGCCG
3' ss Score
7.65
Exon sequences
Seq C1 exon
GACCTTTATGTTGCTGAAGCTTTATCTACTCTGGAGTCTTGGAGGAGCCGTTACAACCAGGTTGTGAAGGACAAAGGAGATCTTGAGTTGGAGATTATCGTCCTAAATGA
Seq A exon
GTATGTCTTTGTGTTCAGAGAGAAGACTGAGTGAGGGGAGGGCTTGAGGGGTGTGGTACCCTGAGGAGGTCCCAATGCTCAGGAGGGCCTTGTGCTCTCCTTAGGTTGGAGTTGTAAACTGGGCTAAGGTGTAGGTGGCCCTGGCCCTTCCTCTGGGCTTCTACTTCATTTGCCTAGCATGTGAGAGGCCCTGGTCTCCATCCCCTAAACTGCAAACAACCATAAGGACGCTCAAGGGGAGAAGCTTCTCCACCACAGAGGCCCAAGGCTGGCCATGGCACACAGTTGTTATGCTTGTCCCAGTGCACTCTGCATTGCCTGCCCAGAGGCTTCCTGCCAACAGGTCAAAGTGAAGGCAGGCAGGCCGAGGCAGCCAGGGCTTCCAGGGTTGGGTGACTGACCTTGACCACTTTGCCACTGGTGAATGTCACTGACCACCTGCTGTCCTCAGCCACGGCTGTTTGTTCCTTCACTGTGAGAGTGTACATGGAACAACTCTCATCTGCCAGCCTGGGTGCCAGCTCTGGGATGCAGCTGGAGGAAGACAGGTGTATTACCCGTCCCGAGCTCCATGCCAGCTCTGGGGGCTACAGGATGCATGGGCTTCTTTCTTTGGCCAAGGAGATAGGCTACCAGGGAGCTTGCAAGCCTCCTTCCCGCTTAAGGAAAACTTCCCTGGAGGAAGTGTTCATGTTACATGCAAACCAGTTCACCATGCACAGCCTGAAAACCTGCCCTGTACTGGGTGCTGTTCTCAAGGGAGTGCTTAGTGGGCAAAGAGAGGAGAGGGAAGGGGTAGGAGGGTGCATGGAACAGATGAGGGTTAAGAAGTAACATCCTCACTCAGGAGGGCAGTCTGTACAGAGGCTCTCTATAAGCATCACCTGTCAACAAGAAAGCCTATGTCCAATGAGCTGAGGCAGCAAATAGGGCGTGGGACACTGGTAAGAAGAGAGGACTCTGGGAAATAGTGAGAGGCGCAAGAGATTCACCTGGAGATGGACATAAGCCAGCAGGTACCTGAAGTTAGGAGAGAATAAAGAGGAGATTCACCCTGGACTTGAGACATGAAGCTGAGGAGAGGTTACTAATGATGTAGAAGATAGAGACTGGTTTGAATATGTTAACTAAGTTAAGAGCTAGTCGGGGAGTGAGCCAGAGCTTATGGCCTAGGCATTTATTAATAAAGAGTGTCAGAGACATCATTTTCGGGGAGGGGTAGGAAAGAGGAGAAACTCATTTATATTTTACAGGAGTCTGAGAGGGCTTTAAAGGGTGGGTAACGTCGCCAGGTGAGGTGCTGCACACCGGCTCCGCCCAGTCAGTGCTTCACTCTGGGTTTGCTGAATCCTGAGTGAACCCTCTGAGAACACAGCTGGGGTCACAGCTCAGTGGAACACTTGGCTAGAATGTAGAAGCTCTGCTTTGTATCCCCTGAGCTGCAAAACCCCAAGTGATTATAATAATTTTAAAGCCTCCAAGCAGCCCAGCAATGGTGGCTTAACCTTAACTCTCAGCACTAGAGAGGCAGAGGCAGGTGGAGCTCTGAGTTTGAGGCCAGCTTGGTCTACCTAGCAAGTTTCAGGTCAGCAAGGACTACACAGAGAAACCTTGTCTCAAAAACAAAGAATAACACTCCCCCCAAACAAACCAAACCAAACCTAAAACCTAACTCAGCAAGCAAACAAAGCCCTCCTAGAGCACAGAGCGTGCACAGGTTGTGGTGGTGGTGGTTGAGGTGGAAGAGCACCTGAGCCTTGGAACTCCAGAGAGACCATGCACGGTGCATTGACCTCACTGGCAACCCTGCTGAGCGGCAGCAAGGAAGCGGGAGTGGGCAGGAAGCAGTTCCCCTTGGCTCCCTCATGTCACGTGAGCATAGTCGCTGATCAGATGTGCACACATAGGAACATGGCTGTGGGGACAAAAGCCACACGTGCCCAGTGCCTTGGGGTGAGGACTACCTGAGCAGCCCTTACTGAATGTATCCTAACACTGAGAGGGTGGGAGGCATGTCAGGTGGTGCTGAAGGCTGGGAGGGTGATGAGAATGGGCTCACTCTAGTCAGCCTGGCTAAATGGTAGACAGCGTCCAGAGAAGGTGTCAACTGGATCACTTTTTAAGAGACGTTACATGGAAATGGGCCACTGGTGTGGGACGGTGGCATGGCTTCGTGGTGAGGAGACTGGGGAACAGCTAGGCAGCATGCCCTGAGGTGAAAATGGCCTTTGGTGGGGTGGACTTCGTCCCTTAGCAAGATCCAGGAACTGATCCTGTCTGCTGACCTTCCAG
Seq C2 exon
CCGGGTGACAGATCTTGTAAACCAACAACAAAGCTTGGAGGAGAAGATGCGGGAAGACCGGGACAGCTTGGTAGAGAGGCTGCACCGGCAGACGGCTGAGTACTCTGCATTCAAGCTAGAGAACGAGAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790:ENSMUST00000046571:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.413
Domain overlap (PFAM):
C1:
PF115593=ADIP=PU(5.0=16.2),PF0003816=Filament=PU(0.7=2.7)
A:
NA
C2:
PF115593=ADIP=FE(34.4=100),PF0003816=Filament=PU(30.2=91.3),PF121283=DUF3584=PU(12.3=41.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types