GgaINT1020400 @ galGal4
Intron Retention
Gene
ENSGALG00000027392 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
Coordinates
chr5:505538-506021:+
Coord C1 exon
chr5:505538-505719
Coord A exon
chr5:505720-505800
Coord C2 exon
chr5:505801-506021
Length
81 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TGAGCTCCGTGCGGGTGTAGGAA
3' ss Score
5.66
Exon sequences
Seq C1 exon
GTCACGGGGGAGGTGATGGACCCTGCGGGGAAGGTGCACTTCCTCCTGCTGGGCACCTGGGACGAGAAGATGGACTGCTACAAGGTGGCAGCGGGCAGCGGCGACAACGGGGCTGAGGGCCGGCAGCGGCCGCACGAAGCGGAGGAGAGCCGCGTGCCGCTGTGGAAGAGGAACCAATTGCC
Seq A exon
GTGAGTTGGGGGCACGGGGAGGGAGAGGGGGGGCTGGGATAGGGCCCTTCCGCAGGGAGGCTGAGCTCCGTGCGGGTGTAG
Seq C2 exon
GAAGTACGCAGAGAACATGTACTACTTCTCGGAGCTGGCGCTGACGCTCAACGCCCCCGAAAGCGGCACGGCGCCCACCGACAGCCGCCGGCGCCCCGACCAGCGCCTGATGGAGAACGGCCGCTGGGACGAGGCCAACGCCGAGAAGCAGCGCCTGGAGGAGAAGCAGCGCCTGGCCCGCAAGCGCCGCGAGGCCGAGGCTGCCCGCGCCACTGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027392:ENSGALT00000042982:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.760
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(15.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGACGAGAAGATGGACT
R:
CGCCAGCTCCGAGAAGTAGTA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]