RnoINT0105678 @ rn6
Intron Retention
Gene
ENSRNOG00000021057 | Osbp
Description
oxysterol binding protein [Source:RGD Symbol;Acc:1308069]
Coordinates
chr1:228421784-228423039:+
Coord C1 exon
chr1:228421784-228421965
Coord A exon
chr1:228421966-228422818
Coord C2 exon
chr1:228422819-228423039
Length
853 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TTTGTTTTGTTTGTTCTTAGGAA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAACCAGCCTCTGGGGAAAATGGAGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGAAAGTAGGGTCATGCTATGGAAGAGGAATCCATTACC
Seq A exon
GTGAGTATAGCATGCCAGCTTCCTTTGCCTTTAACTCCTGAGTGGTATGCCAGTGCTCTGCCTGCATTCTTGGTGACTGTCTGTGGGACTGACACAGGGAGATGAGAACCTTTGAAGAGATGTACATGTAACTGGAGTTGAAGCGTCCTTTGTTCGAAGACTTTCTCTCACCAACCATGTGCCAAATTGGTTTTCTCTTTTCTAAAGTTTCACTTGACTCATGGCTCAGAGGAACCTCTATAGTTTAATGTTCTATTTTTGAGACAGGGTCTTACATAGTCCAGGCTGGTCTCACTGTGTACTTGAGGCTCTCTTTGAAGTCCTGATCTGATCCTTCTACTTGTACCTTCCAATAACTGGGTTATAGGCATGTACCACCATGTCCTGCGTTCTCATTGCAATTCAGAGCAGAGCTTTTCAAAAGCAACTGGGGAGAAAGGTGCTTTTTACCTGCTAACAGTTTCACCCACAGGCCACTGAGGTAAAGCACAGCACTTAGGAAACAAGTGCAGGTCATCATCTTATATATCATTTCTACAGAAGTAGCCAGATTTTCCCAGAAAGGTCTAGAAGGAAGCAGAGGAAATAGGCATGAGGCCGCTTTAAAGATTTCATTCTTCCTGATAAATGTAGATAATTCTGAATGCAGACGCTGCAGGCAAACTTTTTGAAATGATGCTGAGGAAGGTGGGAGTGGTACAGTTTAGCTTTCTTTCTTGGGGATTACCTGGTAAGGCTTTAGACTTCCTATGTGTGGGAGGGACACTTAGGTACAGGGCAGTGTTCTGAGCTGTTGTTCCTGGGTGAGACTGAGGCAGTAGCCCTGCTTTTCCTTTGTTTTGTTTGTTCTTAG
Seq C2 exon
GAAGAATGCAGAAAACATGTACTACTTCTCAGAGCTTGCGCTCACTCTCAATGCCTGGGAAGGTGGCACTGCTCCTACAGACAGCCGGCTGCGGCCTGACCAGAGACTGATGGAAAATGGGCGCTGGGATGAAGCAAATGCTGAGAAGCAGCGTCTGGAGGAAAAACAGCGACTTTCTAGGAAGAAGAGAGAAGCAGAAGCTATGAAAGCCACAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021057:ENSRNOT00000065411:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=NA C2=0.680
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(15.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTGAAGTGACAGACCCA
R:
TTTTCCTCCAGACGCTGCTTC
Band lengths:
344-1197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]