MmuINT0113576 @ mm10
Intron Retention
Gene
ENSMUSG00000024687 | Osbp
Description
oxysterol binding protein [Source:MGI Symbol;Acc:MGI:97447]
Coordinates
chr19:11990601-11991815:+
Coord C1 exon
chr19:11990601-11990782
Coord A exon
chr19:11990783-11991594
Coord C2 exon
chr19:11991595-11991815
Length
812 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CTGTGTGCTGCTGTCCTCAGGAA
3' ss Score
10.97
Exon sequences
Seq C1 exon
GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC
Seq A exon
GTGAGTGTGGCATCCCAGCTTCCTTTGCCTTTAACTCTAGCATGGTACGTCAGCATTCTGCCTGCATTCTTCATGGCTACCTGTGGGAATGACCGGGGGGATGAGAACCTTTGAAAGAGACTGTTCCAAGACTATCTCACCAACCATATGCCAAATTAGATTTCTCCTTTCTAAAGTTTCACTGAATCAGAGGAATCCCTATAGTTTAGTTAAAGTTCTATTGTTGAGACAGGGTCTTACATAGTCCAGGCTGGTCTCTCTGTGTACCTGAGGCTCTCTTTGAAGTGCTGATCTGATTCTTCTACTCGTACCTTCCAAGTACTGGGTTACAGGCAGGTACCACCAGCATTCTCAATTCAGAGCAGAGCTTTTCAAAAGCAACTGGAGAGAAAGGTGCTTTTCACCGGCTAACAATTTCCCCTACAGACCCTAGAGATAAAGCCCAGAGCTTGGAAACAAGTGCAGGTCATCATCGTATATACTTACTGCGTCTCCAGAAGTAGCCAGACCTTCCCAGGCCGAGGTCTAAACAGAAGCCCAGGCAACAGAGTGAGCAGCTCTAGAGCTCGCTCTTCCTGATGAGTGGAGATGACTCTGAGTGCAGCTGCTGCAGGCATCTGTTGTTTGAAAGGGCGCTGGAGAAGGGTGGCAGTGGGAGCATTGAGCTCTCTTTTTGGGGATTGCCTGATAAGGCTTTAGAGTTTCCACTGTTGGCCACTTAGATGCAGGGCGGTGCTCTGAGCCGTTGCTCGCTCGCCCCTTTGGGTTGGTTCAGGCTGTGAGCTGCCTTTCCTGTGTGCTGCTGTCCTCAG
Seq C2 exon
GAAGAATGCAGAGAACATGTACTACTTCTCAGAGCTTGCCCTCACTCTCAATGCCTGGGAAGGTGGCACTGCTCCCACGGACAGCCGGCTGCGGCCCGACCAGAGACTCATGGAAAACGGGCGTTGGGATGAAGCAAATGCTGAGAAGCAGCGCCTGGAGGAGAAACAGCGGCTTTCCAGGAAGAAGAGAGAAGCAGAAGCTGCGAAAGCCACGGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024687:ENSMUST00000025590:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=NA C2=0.693
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(15.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTGAAGTGACAGACCCA
R:
GAAAGCCGCTGTTTCTCCTCC
Band lengths:
356-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types