DreINT0108698 @ danRer10
Intron Retention
Gene
ENSDARG00000004634 | osbp
Description
oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
Coordinates
chr1:52050577-52053633:+
Coord C1 exon
chr1:52050577-52050764
Coord A exon
chr1:52050765-52053406
Coord C2 exon
chr1:52053407-52053633
Length
2642 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGA
5' ss Score
5.75
3' ss Seq
AAGGTTCTCTACATTTTCAGGGA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTCACAGGGGTGGTGACGGATAAAGATGGGAAAGCACACTATGTTCTGTCCGGCACGTGGGATGAGAAGATGGAGTGCTCTCGGGTCATGCAGAGCAGTAGAGGAGGAGAGAACGGAGCCGATGGACGACAGAAAACCGTCTATCAGACACTCAAAGCCAAAGAGCTGTGGAGGAAGACACCGCTGCC
Seq A exon
GTAAGATATGCTCTGATCAGATGCTGTGCCATTTCAGACCCTCCTTTTCTTAAAAAAAAGGCACTAACAATGGAAGTGAATGAGGCCTATTTTCCCTATTTATTTATTTAGTTAGTTAGTTAGATAGTTTGTTAGTTTGTTAATTAGTTTCTTTTGGAATTTTGATTTAATATTTGATAGCAAAGCAGTCATACATTTTTATATTACAATTTTGGTGTTCTGTAAAATAAATAAATTAATTAATTGCATGATTATTACTTATAATTTTTAGTGTAATAGTATTATTACAGCAGTTACACATTTTTTTTAAAGATTGACACTAAAACAAATAAAACATTTGACCAAAAAGTTTTATATAATAGTAATATAATTGTTGATATTAATCGTGGGGGAAAATAGTTTCCCTTTTTGTTTTTTAATCACATGCCTGATATTAATGCAGGTGCTTTTATGTAATTTAAAGCTTTACATTTCTTCCTTAACATCTAATTTTTAGTTTTATAGTTTAGTATTTGTAATTTGTGCCAGTCAACATTATTATTTCATCTGAGCCTAACTTGTATTGAGCCTGGGATTATCCATTAATTAATAAATAATAATTAAAACACATATCTAAGACTTTAAAGGGGATCTATTATGCAAAAACCACTTTTATAAGGGGTTTAAACACAGTTTTGTGGCAGCAGTTCATGAATATAACCAGCTCCTAATGGTAAATATTTATTAAGTTATACTTTTACAATCACACTTGCTAAAATGAGTCTGAAGAAACACTTTGATTGACATTCTCCCTTTGTGTGTGTCTTTAGAGGGGAAAGTCCCGCCCATTAGTGACCATCTCTCCCTCATTAGCATGGGACGTTCGTCATGTTCTTATATCTGCCACTATGCTGACACAGGCCTCTATACCTCCGTCCTCTTCTGAAAAGAGCACAATCTCATTTGAGTTTAATGCGACAGTCATCAAAATGGCACAATTAGGATTAAAGGCTTAAAGAGCAGTTTTAAAGAGCTACAAAGATTCTTTGTGTGGTATTTTGAGCTACACACACACACTCTCGGGACATCAGAGACTTATTTTACATATTGAAAAAAAGGAGAGTAATAGGTCCCCTTTAAAGCAATGTTGGCATTACCTAATCAATATTTATGAACAGCGGTAGGCGTGGCTTAGAATACAGCGAGTGCACAGAGTTCTCTTTGAATCCAGCAGATTTTTATTTATTTTATTTACTTTTTATTCATTATTTTTTCATTTACACAACAACCCCCTCCCCAACAATTTTACCTCTTACAGATGAGGAAATAAAAAATATTTTAGGAAGAAAATAAAATATTAAATAAGAAAAATAATACAAAGTTAGTGAATAAATAAAGATTAATGCCGTCATAAATTATTTTCAGGAGACAGATTTGAACAGAATCCAGCTGATTTTTATTTTTTAGAAACAATTTTTTATGATAAAAAAAATACAGAACATCCACTTCGCCAAGAATGTATGAGGGAATAAAAACATAATAAAAGCATAATAATAAATAATAATAATAATATAAAAATAAAACAAAATAATACAAAATATTTAAATATTAATGACATTAATATGCATTTATTTTGTATTATTTTCTCATTTAATTTTCTTACTTTATTTTGTATTTAATTTTTATTCATGATTTTTAATTTGTTTTTACAGAACAACCCTTTCCCCAACAATTTAACCCCTTACAGATGACAGAATAATAATAATACCAAATAAATAAAGATGAATGCCTAATAATCATAAACATTCCTTTGGCTTAGTCACTTTATTAATCTGGGGTCGCCACAGCAGAATAAACCGCCAACTTATCCAGCATATGTTTTACACAATGGATGGCCTTCCAGCAGCAACCCAGTACTGGGAAACATCCATACACACTCATTCACACACACACACTCACGCACACACACACTACGCCAAATTTAGCTTATTCAATTCCCCATAGCACATGTGTTTGGACTCTGGGGGAAACTGAAGCACCTGGAGGAACCCCATGCCAACATGGGGAGAACAAGAAACGCCAACTGACCCAGTCAGGACTCAAACCAGCGACCTTCTTGCTGTGAGGGGACAGTGCTAACCACTGAGCCACCATGTTGCCCCATCATTAATATTCATTCAATCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCTGGGGTTGCCACAGCGGAATGAACCGCCAACTTATTCAAGTTCTACGCAGCAGATGCGCTTACAGCTGCAACCCATCACTGAGAAACATCCATACACACTCATTCACACACATACACTACGGTCAATTTAGCCTACCTAATTCACCTGTGCAACATGTTTTTGGACTTGTGAGGGAAACCAGAGCACCCGGAGGAAACCCACGCGAACGCGAGGAGAACATGCAAACTCCACACAGAAATGCCAACTGAGGCTCGAACCAGCAACCTTCGTGCTGTGAGGTCAACGAGCTACCCCCTGCGCCACCGTGCCGCCCATCATTAATATTAATGTTGTATAATGAATAATATTAATAATGATTAATAATAAATTATTTTCAGGGGACACTTTATGTACAGAATCCAGAAGATTTCTCAACACTCACTAAAAAAAGGTTCTCTACATTTTCAG
Seq C2 exon
GGAGGGCGCTGAAAACATGTACTACTTCTCAACGCTGGCGCTGACGCTAAATGAGCCGGAGGAAGGCGTCGCTCCCACGGACAGCAGAAAGCGGCCGGATCAGCGTCTGATGGAGCAGGGCCGCTGGGAGGAGGCCAACGCTGAGAAACAGAGGCTGGAGGAAAAACAGCGCACGGCCCGAAGAGAGCGAGAGCGAGAGGCCAACCGCTCCGCCAACCCTGAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004634:ENSDART00000141530:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=0.801
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(15.3=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]