BtaINT0105890 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020332 | OSBP
Description
oxysterol-binding protein 1 [Source:RefSeq peptide;Acc:NP_001192899]
Coordinates
chr15:84115357-84116596:-
Coord C1 exon
chr15:84116415-84116596
Coord A exon
chr15:84115578-84116414
Coord C2 exon
chr15:84115357-84115577
Length
837 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TCCTGACCCCTGCCCTGCAGGAA
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTGACGGGGGAGGTGACCGATGCCTCGGGGAGAGTTCACTTCGCGCTGCTGGGCACGTGGGATGAGAAAATGGACTGCTTCAAAGTGCAGCCGGTCCCCGGGGAGAACGGGGGTGACGCCCGGCAGCGCGGCCACGACGCGGAGGAGAGCAGGGTGCTGCTCTGGAAGCGGAACCCTTTACC
Seq A exon
GTGAGTATCTCGCCGGCCCCTCCCCTGCCCTCCGGCTTCAGTCTGCGCGGACCAGCGCCATGGTGGACGCCTGCAGAGGACCCCAAGGCGGCCCTGTGGGGTGGGGTTGTCGCCTGCTTTGTCCCAGGAGAGTTCAAACGACTCAGACCACACCTGCCAAAAAATAATTTGGTGTCTCCTAAAGGTCCTTTGGTGGACAAGGAAATGGCAACTCAGTCCAGTGTTTTCTTGCCTGGGAAATCCCGTGGACAGGGGAGCCTGGCAGGCTGCAGTCCATGGGGTCACAGAGTCAGACACGACTTGGCAACTGAGCATGCACACACCCAGAGGTCCTTCAGATTGTGATTCAGAAGAATATTTTTCTGTAATTTAGAGCAAAACTGTTCAGAAACGGCCAAGGAATAAAGATGCCTACCACCTGTGGCCTAAAGGCTTATGGCAATATGATGGTTCCTGAGATAATGTCCAGGACGTTGGAAATAATTAAGACGGAGACCGTTTGTCTGCTGTCATCATTTAATATGTTTAGTCCTTAGTGATAGCCAAGGTTATCCCAGAAAGTGGTGAAAAAAAAGCAAAAGGAAACAGGCTTGAGGTTTTATTTAGTAGAATGTTTCAGTCTTCGTAATTTCAACTGAGCATAACCCACACCCAGAAAACAATCCAGCTAGGGGGCCCTGGGAGGGGAGGGGATGGTCCCGCCCGGTCTCAGTTAGGCTCCCCGACAGGCTCTGTGGACACCTGGGGCTGTATCCCTGGGGCGAGCTCAGCTGTGCTCTGGCTCTCGGGGCTCTGGGCTCTGGCGTTGCCCGTCCCTTCCTGACCCCTGCCCTGCAG
Seq C2 exon
GAAGAACGCGGAGAACATGTACTACTTCTCCGAGCTGGCTCTGACCCTCAACGCCTGGGAGGCCGGCACTGCGCCCACCGACAGCCGGCTGCGGCCCGACCAGAGGCTGATGGAGAACGGGCGCTGGGACGAGGCGAACGCGGAGAAGCAGCGCCTGGAGGAGAAGCAGCGGCTTGCGAGGAAGAGGCGCGAGGCCGAGGCCGTGAGGGCCACGGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020332:ENSBTAT00000027095:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.680
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(15.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCACGTGGGATGAGAAAAT
R:
GTCCTCCGTGGCCCTCAC
Band lengths:
352-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development