GgaINT1021403 @ galGal4
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8288642-8289175:-
Coord C1 exon
chr17:8289080-8289175
Coord A exon
chr17:8288994-8289079
Coord C2 exon
chr17:8288642-8288993
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTCTCTCCCTGTCCCGCAGCCG
3' ss Score
10.62
Exon sequences
Seq C1 exon
CGCCAGCTCGGGGCAGACCTTCCTCTCCGACGTGGACTCCACGGATGCCGTCAGCACCTCAGGCTCAGCCACCACCAGCCTGTCCTGCGAGTCCAG
Seq A exon
GTGAGGGCTGTGGCCCCTTCGCCCCCTTCCTGAGAAGCTTCTCTCTCCCCTCACGGCGCCCCATTGCCTCTCTCCCTGTCCCGCAG
Seq C2 exon
CCGGAGGACGGTGGGCAGCCGTAAGCGCAAGCAGACCGTACTGACCCCCCCCTCAGCACGGCCCAAGCGAGGCGGCGGGGCGGCAGGCAGGCAGCCAGCAGTGGGCAGCCCCCAGGGCAGCGAGGTGACGTGTGGGCCTGAGCGGCCGGACGATGGCATCGACAGCCACACCTTCGAGAGCATCAGTGAGGACGACTCGTCGCTCTCACACCTGAAGTCGTCCATCAGCAGCTACTTCGGGGCGGCGGGGCGGCTGGTGTGCGGGGAGAAGTACCAGGTGCTGGCACGGCGTGTGACGCTGGAGGGCAAAGTGCAGTACCTGGTGGAGTGGGAAGGGACCACCCCCTACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=NA C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF140611=Mtf2_C=WD(100=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGCACCTCAGGCTCAG
R:
CCACACGTCACCTCGCTG
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]