BtaINT0110736 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112143052-112145044:-
Coord C1 exon
chr8:112144949-112145044
Coord A exon
chr8:112143964-112144948
Coord C2 exon
chr8:112143052-112143963
Length
985 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCGCCCCCTCCCCACGCAGACG
3' ss Score
10.44
Exon sequences
Seq C1 exon
CGCCAGCTCAGGCCAGACCTTCTTCTCGGACGTGGACTCCACCGATGCCGCCAGCACCTCTGGCTCTGCTTCCACCAGCCTCTCCTACGACTCCAG
Seq A exon
GTGAGCGCCCCGGCGCCCCTACCCCCACCTGTGACGAGGGCCTCACCCTGCGCTCCTGTGTCGGGACCTGGCCTTCTGTCCGTGTGGGCGTCGGGGTCTGAGACCCGCTGCTTTTTCCCACTCCTCTTCACCCGCTGCCGTGTGTGTGGCACCTCTTGCTGGGCAGTCTCAGATCCGGGTTCTGCCGTTCTCGGGCTCTGACCGTCATGTGCCAGGATTCTGTGACATCTGTGCCTCTGCCTGTGAGGTCCCTGGCCGTGGTTCTTGGCTGTCTGAACCGTGTCTGCCTGCTGGGGGTCTTTCTTTAAGGAGCAGAGCCTGACAGAGAGGGGAAATGTTCTCCTGCAAAGTGTGAGGACTGGGAGAGGGGACAGGAGTCCCCAGGAGCCTCACGAAGGGTACCACGTGCTTCACCACAGCAGGTCCTCAGCAGCAAAGGGCAGGGGGGTGCTGCAAAGCGCACGGACCCGCTCTCAACCGAGGCTCCTTTAACGGTGTTCAGGGCACTCGTGACCCTTGCAAGAGGGGAATTAAAAGCATGCCCGTTGAAGTCCGTCGTCTCCAAACACCTCTGGGTGTCATTCTCTGCTGCCGCCTCCGTGGTTTCATGTCCTTCTCGCTTCTTAGGTTCTTACTGGTGCTTTGGATCTGGGTCTCTAAGTGCCTGTGAATGTGTACTCTTCTTTAGTTTCTCTCCCCTCTGCCCTGTGGGGGTGGGGGGAGTGGAGACACGTTTGTTTCTTGGACTCAGGCAGCGCTGAGCTCAGTATAAAAGAGCGAGGCTCTGGAGATGGACGCAGCTAGGGTTGGGTCCCGGCTCTGCCACTCCCGGCTGGCACTTTCCCCCTCTGGGGTCTCCTCAGGGCTGCCATGAGGATTCAGTGAGCCACCTGGGGCCTGGGGCCGGTGGAGCTCAGGGACAGGGACTGGTGGGGGTGATCCCATCTCATTTCCATCCTCCCCGCCTCGCCCCCTCCCCACGCAG
Seq C2 exon
ACGGACGGTGGGCAGCCGCAAGAGGAAGCTGGCAGCCAAAGCGTACGTGCCACTGCGGGCCAAGCGCCGGGCAGCCGAGCCGGGCGGACGCTGCGCCTCGGACAGCAGCGCAGAGGGGGCCTCAGGCCCCGAGCGGCCAGACGAGGGCGTCGACAGCCACACGTTTGAGAGCATCAGTGAGGACGACTCGTCCTTGTCCCACCTCAAGTCGTCCATCACCAACTATTTTGGCGCGGCGGGGCGGCTAGCTTGTGGGGAGAAGTACCAGGTGCTGGCTCGGAGGGTCACACCAGAGGGCAAGGTGCAGTACCTGGTGGAGTGGGAAGGGACCACCCCTTACTGACCAGCCCCCCAAGGAGGCCCGGAGCCCTGGAAACCAAAGGAGAGGCGGTGGAAGCCACAGGCTCCCCGGTCCTCCCCAGGCTGCAGGAGGGAGGGACAAGACAGAGTTGAGGGCCCGGCTGAGCTCTGCCTGCCCGCCTGTGCCTCTGCTGCCCCGTCTGCTCTGGGCCCTCAGGCTCACCGCCCCTTCGCCCGTGTCTCTGCGGTCCCGCCGGCTGTCTCCACATGCTCCCTCCAGCTGTTCACCTGTCCCTCCAAGTTAGCATCCCTCCTGGCTCCCCCGTGTGTCCCCCTCCCTTTCCCCTTTTGGGTGTGTGCATTTGCACACCCAGCCCTCCCCTGGACATCCTTCACACCTGACCCATCCCGGGGACCACACGAGGAGGACGGAAGTCTTTGAGAAAGACGGGGTGAAGGTGGGTAAGAAGAGGCCTTGTGGAGCTCCTCTCTCACGTTCCCACCCCTCCTCCTGTCCCAGGGAGGAGGTGGTGAGGGTGGGAGAACGCCTCTGGGAAGCCTGCAGGGCAGAGACCCTGCGACTCTCAGGATCCAAGGAGGAGGAGGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958:ENSBTAT00000022557:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF140611=Mtf2_C=WD(100=44.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTCTCCTACGACTCCAG
R:
CTTCCCACTCCACCAGGTACT
Band lengths:
347-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]