HsaINT0123949 @ hg19
Intron Retention
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:24566]
Coordinates
chr9:123617931-123622463:-
Coord C1 exon
chr9:123622368-123622463
Coord A exon
chr9:123620565-123622367
Coord C2 exon
chr9:123617931-123620564
Length
1803 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTCCCACTTCTGATACAGATG
3' ss Score
8.53
Exon sequences
Seq C1 exon
TGCCAGCTCAGGCCAGACCTTCTTCTCAGATGTCGACTCCACCGACGCTGCCAGCACCTCTGGCTCTGCCTCCACCAGCCTCTCCTATGACTCCAG
Seq A exon
GTGAGCTTCCTAGAGGTCTGGCCTTCACATTTTGCAAGGACCATCATTCCTCTCAGCCCCTCCACCTCCCACTTCTGTAATGTGTGGCTCATTCTATGTGTCTCAGTCTCTGGCGGGGAGTACCTGGCCTTCTGCAATTGTGAGTCTGGCTCTCGGACCCTCTGGTTCTGAGTCACGGGGCTTTAGATGGGACCTAAGTATAGGCATTCAGCCTCCCGTGGTTCCATCCCTTTGGAATGCTTCACCTGCTGCAGAAGCTTGTACACACCTCTCACTGGACGATTCCAGTTCTGGGGTTGTTGGACCAGAGTTTCTTTCACTTTTGGCCTCCACGTGCCATGAGCTTGGGTGTCTCTCTGCCTCTTGGACTACAGAGTTCCCTGACCTTGATTCTTGGCTGTCTGAATATGGTGCCTGTCTTCCGGGGTCTCTAAGGGAAAGAGCCGTTTATTTAGAAGCCTGACAGAAGATGGCATCCTGCAGGGTGGAAGATTTAGGAGTGGGGACAGAAATCCCTGGGGGCCTATCTCCAGTACAACTGGTCTGGCAACAGCTGGTCCTCAGCAGTACGGGGAGTGGTCGAGCACAGGGCTTTCCTCTGCACTCAAGCTGCACTGTATTTTAAGATACTTGAGGCCCTTGCAAAAGTAGAATTAAAAGTATAATGCCTGGCCAGGCACGGTGGCTCATGCCTGTCATCCTAGCACTTTGGGAGGCCAAGGTGGGCAGATTACCTGAGGTCAGTAGTTCAAGAGCAGCCTGGCCAACATGGTGAAACCCCGCCTCTACTAAAAATACAAAAAAAATTAGCTGGGTGACAGAGTAGGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGGACAATGGTATAATGCCTGTAGAGGTCTGTCTTGGAGTCTGTGTCTCTTGACATCTGTCTAGGTGTCCTCTGCTGTTGCCTGTTTTTTCTTTCTTCCTGTTTGTTGGTTGGTTTGAGACAGTCTCACTCTGTTGCCCAAATTAGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGCCTGCCAGGCTCAAGTGATTCTCATGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCGTGCACCACCATGCCTGGCCTATTTCTTCCTGTTTCTTTGGTTTCACCAGCACTTCAGGTCTTGGTTTCTGTCTCTAAGCATCTGAATCTGTGCCTTGTCCTGTGTGTCTGTGTGTCCATTTCTCTAACACCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTCTGTCAGTCTCTCCATCCAGGCTCTAGGGTACAGGGTCCTTCAGTCCCTAACCCCCAGCCCTATGTGACCTATCTTGTTCCACCAGTCTGGTGAGAGGCAAGGTGGGATAAGCAGGGCCTCTGCACTGCATGGCCTCAGGAGGCTCAGAGAATGGTGCTCTTGTGCTTTTGCAGTGCCGGGATCCTAGCTCTAAGAGCATATGCTTTGGAGTTGGACGTTCTTACGTTTGAATCCTGGCTCTGCCACTCCCTACCTGGTTTTCTCCTCTGGACCCTCAGTTTCCCTCCTCGCAGGGCTCTTGTGAGGATCTGGTGAGATAATCTATGCCCAAGGCATAGATTATCTCAGGGACTACATAACAGGCACCTTTGAGAGAGCATGGGAGAAGATGGATAAGAGAATGCTGTTCAGCGCTTTTCTCTTCCACTTTCCTGGTACTGAGGGGAGGACTCAGGGAGAGGAATTTACTGTGATTGTTCTACCTCATTCTCATCATCTTCCTCTCCCACTTCTGATACAG
Seq C2 exon
ATGGACAGTGGGCAGCCGAAAGAGGAAGCTGGCAGCCAAGGCATACATGCCCCTGCGGGCAAAGCGGTGGGCAGCTGAGCTGGATGGACGCTGCCCCTCGGACAGCAGTGCAGAGGGGGCTTCAGTCCCCGAGCGGCCAGACGAAGGCATTGACAGCCACACATTTGAGAGCATCAGTGAAGATGACTCATCCCTGTCCCACCTCAAGTCATCTATCACCAACTACTTTGGTGCAGCTGGGCGGTTGGCCTGTGGGGAGAAGTACCAGGTGTTGGCTCGGAGGGTCACACCTGAGGGCAAGGTTCAGTACCTGGTGGAGTGGGAAGGGACCACCCCTTACTGACTAGCCCCCGGGGGTGCCAGGGGTCCTGAAAACCAAAGGAGGAGCAGCAGAAGCCATAGGCTCCCCAGCTTTCTCCAGGCTGGGGTGGGAGAAGGAAGCAGGACAGAGCTGCAAGTGCCTGGCAGAATGCCCTGCCTGCCTGCCTGCCAGGCCAAGGCCTGCGTCTCTCTGCTGTACCAGCTCTGTTCCAGGGCCTCCTCAGGCTCGTTACCCCTGTGCCTGTGTCTCTACACACTCCACACCCCCTCAAACTCTGTTTATCTGTTCTCTGACCTTGTGTCCCCTGCGCTGGGACCCTTCCTCCTGAGGCCCAGGTCTTTGTCCCCAGTTGTGTGCCTTGACCTCTCTCGCCCCTTTCTGGGTGTGTTCGCACATCCTGTGTGTGCACAGCTGTCCCTCCACTGGATCCCCTTCACACGTGACCCGTGGGGCAGCCAGTCCTCCCAGGGACTACATAACAGGCACCTTTGAGAGAGCATGGGAGAAGGTGGATAAGAGGATGCTGCTCAGTGCTTTTCTCTTCCACTTTCCTGCCACTCCCCACTACCCTCGGAGAGAGGTGGTGGGATGGGAGAGAGCCCCTGTGAAAGCCTGTGAGGATCTGAAGAGTAAAGGGCTGGGTCTGCCTCAGAAGGCACCAGCACCAGGGCCCAGGTATTAAGGCTGAGAGTGAAGGCTGCCAATGTCAGCTTTGGAGGTCCCAGAAGTCTTCTGTTCTCTGGCCTCACCCCCTCAGTCGCCATAGAGCTGGGCCTGGCCTTGCTGGAATGGAGGCATCCTTCCAAACCTGGGGGACGGGGGTGGGGGGTGGTAGTGGTGGGAGGGAAACCATGTCTTGCTAAACCTGTTTCTGGTGCCTCCCATCCCCAGACCCACCAGACACCACACAGCAGACAATACACACCCACTCGCACAAGCTTCCATCCACATGTGTTGTACTTTCAGCTCTAGGCATGCAGACAACCCCACACGGCCACACCACCACATGCCCAAGTGTACACACACAGAGCCACACCGTCCCTCTGGGCCTGCTGGCTCCTCCCTTGGCTTTCCCTTGGCCCACTTCCAGGGCCCAGGTGCTGCAACTAAATGTGAAAGCTCAGTGGCCGCTCCTTCTTTCAGCCCATCAACCAGCATTGGTCCCATAGGGAAGCACAGGGGACTCACCCTCTTTCATATCCCTTGCCCTGCCCTGAAATGGACAATCACTTTTTGGGATAGGTTGAAATTTTTAAAGAGCCTGCATCATTTGGTTCCCTCAAAGGGAAGCCCTTGCCAGTGGGGGTTTGAAAGAGAATTTTTGGAACCAACATTCAAATTCTGCCTCATCTGGAGGGAAACCAAAATTGGGAGGGGGAAGAGGACCCCTGATGTTTTGCTGCTTCCAGAGATATTAGAAACTGACTCACTTGATTGGAAAATGGACAAAAGTGCCTTGACGTGGAGGGTGGGCACCAGATGGGGACCAGCCTTGCCAACTGCTGCTGTGGCCTCCAGCTTGGCTGGTTTTGCAGGCCGCCAGCAGGAAGGCGAAGGTGGTAGTACAGCAAGAGGCACTGGCGGGGCAGCAGGCCTGCAGGAGCTGTTTTTCCATTGCTAGGCCTGACCCCTCTCTACCTGTGAGCGTTCAGGGGGTCCCTGAGATAGTTTAGATGCCCCCCCATCTTAGACCTCAGCTCCCACAGTGCCTTTTAAGGGGGACCTCACCTCCTGTGCACAGCCCACCCACTTTCCTCTGCTTCCCTGGCACAGCCCAGGCATAGACGAGCTGGCGTTGGACCCAGTTCTTCCCCCTTTTCAGCCCCACAGCTGCTGCCACAGGGGCCAACTAGGGCCAGGTGGAAGGGGAGCTGAGAAGCCAACCCCTAGCCCAGGGGTGCTGTGGGAACTGGGATCCAATTTGTAGCTTCCTGCCTGGCTTCAGAGAGCCCAGCAACCTTCTAGGCCTGCTTTCCAGACTTCTGAGATAGCCTGGGATGAGCAATCCTGTTATAGTACATCTGGACCTTCCCTACCTGGGCTCTGGGGAGGCTGTGGGCCTGGAGAGGGAAAAGGAGGGAGGGGGTGTCTGCACCACCTGGGAAGATAGCACAAGGCCTAATGAGGTCACCCTGACTCCCCACCCCAGCATTTCATTCATACCAGATAATAGCTGCATTACTGCCAACTGACCTTATAACCCTCTGCACCTTCAAAAAGATTCATGGTTTTTAATTGCTGCTTTTAATAACATTTGTTAAAGTTATAATTAATGTGTCTGATTTATGATTTAAAACCTCCCTTTGAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403-PHF19:NM_015651:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF140611=Mtf2_C=WD(100=44.3),PF0038519=Chromo=WD(100=22.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGATGTCGACTCCACCGA
R:
CACCTGGTACTTCTCCCCACA
Band lengths:
343-2146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)