RnoINT0110355 @ rn6
Intron Retention
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13957136-13960712:-
Coord C1 exon
chr3:13960617-13960712
Coord A exon
chr3:13959480-13960616
Coord C2 exon
chr3:13957136-13959479
Length
1137 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTCCCCCTCTCGATGCAGATG
3' ss Score
11.12
Exon sequences
Seq C1 exon
TGGCAGCTCAGGCCAGACCTTCTTCTCAGACGTGGATTCTACCGATGCTGCTAGCACCTCAGGCTCTGCGTCCACCAGCCTCTCCCAGGACTCCAG
Seq A exon
GTGAGCTTCCCGAGGGTGTGTGCAGGAGCTCTCTGTGAGGGACTGAGGTCCCCAGCCTGGCCATTCCCTACTGCTGGGTGGAGACTTAACCTTCACTTCCTGGTCTTCTGTGACTGAGTCCGCTCTGGACCCCTCTGTTCCAAAGCACCAGGGTGGAGCCAAAGTTGCTATGAGCCCTTCTGTTTGTGAGATTCTTTGCCTGCAACCGTTATGTGATCCCTCTCATCGAGTGACCCAATTCTGGGACCTTTTGATTAGAGAAGCCATTACACTCTGAGCTTCTTGGCATCTGTGTGTCGTAGCTGTTCGTCACCTGTGGCTCGGACCACAGGGCTCCTCCTGTTCTCGTTCCTAGCTGTCTGATTTTTGGATCCTAGGATCTTTAAGAGGAAAATTCGCTCCTTTTAAGCAGAGTAAGATGGCAGGCTGTGAGGTGTGGCTGAGAGTACAGCCTGGTTTACTGCCGGGCACAGCCCCCTCTGCATTCGTATTCCCGAGCCTATGGAGACTTCGTGGGAGTAGACAAATCTATATGGATAGAAATCCTCTACTTGGCGTACATCTCTGACTTGGGTCCTTCTCTGATGTTGCCTCTGTAGCTGTAATATGGGTTCTAAGGGATCAAAGCCAGGGCTCCGTGCTTACTAGACAAGTGCTCTATCACTGAGCTACACTTACCGTCTTCCTGCTCCCTTGGGTTCTCGATACGCCTCCAGACCTCAGCATCTGTTAACAGGCAGTTTGTCTGTTTTGCTGACACCTCTGCCTATGTGGTACAAGGCCCTTCAGTCCCTGCCTCTGTGTAGCTCACCCAGTTCATACAGAGGACTAAAAAGCCCAGGCAAGACCTCTGCACTGTGGGACTTCAGACGCACCCATGACAACAACCCACCCTTCTAGATACAAACAACATACACTTCCAAATCGAACATACTTAGGTTGGAATCCTGGCCTTTGTACTCCCCAGCTGATGTCTCCTCTGGAGCCTCAGTTTCCCGGTTACAGGACCTCTCTGAAGTTCCATCCATGCCCAGGGTCCGGCCTAGTCCCTTATACCTAAGAGCCTCTCAGACTGAGGAATCTTATGATTGCTTCAACTCATCCCCCATCGTTTCCCTCTTCCCCCTCTCGATGCAG
Seq C2 exon
ATGGACAGTAGGCAGCCGTAAGAGGAAGCTGGCGGCCAAAGCGTACAGGCCCCTGCGGGCAAAGCATCGGGCAGCCGAGCCGGATGGGAGATGCGCCTCAGACAGCAGTGCAGAGGGAGCTCCGGGCCCTGAGCAGCAGGATGAAGGCATCGACAGCCACACGTTCGAAAGCATCAGTGGAGATGACTCCTCCCTGTCCCATCTCAAGTCCTCTATCACCAACTACTTCGGTGCAGCTGGGCGGTTGGCCTGCGGGGAAAAGTATCAGGTGTTGGCTCGGAGGGTCACTCCAGAAGGCAAGGTTCAGTACCTGTTGGAATGGGAGGGCACTACCCCTTACTGATTATCCCTCAGAGGCTGCCCAGAGGCTGCAAACCAAAGGAGGGGCAGAAGAAGCCCCTGGGTCCCTGTTTTCTCCAGGCTTACGGTGGTGGAGGGAAGCAGGACATCCTGGCCGCAGCCCCTGCCTGCTGTCTGCCAGGCCAAGGTCTGTGTGCTGCTGTACCAGTTGCCCGAGTCTCTGAGGCCCTGCTGGCTCTCTCTCGTCTATATCACACTCCATACCCTCAAACTTTCCATTGGTTCCTCCGATGGTACCCTGGCTGTGACCCCTGATCTGAGGCCTGAAACTGATTTTCGTTGTCCCCAGTTCTCCATCTTCTGACCTCTCCCCTGCTTGGGTGTTTCATGCGGACACACATCTTCCATGCACATATGCTCATCTGTCCCTCACTGGGACCACAGTGAGGAAAGGGAACCCTGTGGGTCTTCCACTTTCTCACCAGTACCCCTCACCCAGGAGAGTAGGGGATGCCTGAGAAAGTTCAGGATGCCTGCGACCCAGAGCCTGGGAAGTGATGGCCTGGGTCTCTACTGAAGGGACGAGAATCAGGGTCTTTTATTGAGGCTGGGAAGGGGGACTAAGGGAGTCAAGGCCAAGGCTCCCAGAAGTTTGCCTGTCCCCAGCAACAGCTCTTCACTGTTGCCGCAGACTAGAGCCTGGCCTTGCTACATAGACGTGTTCTTGAACGCGCAGATCTGGGAGGAAACGATGGGGAGGACCCATCCCAAACACTGTGTATACAGACAAACACCACCACACATCCCCACCAGGGTGCCCTGGCCCTGTCCTTGGCCTCTTCCAGGGATAAATGCTGCAGTTAAATGTGAAAACCAAGCTCCGGCCTCCTCTGGCCTGTGAACCAGCCTTGGCCCCACAGAGAAGCACAAAAGACACCCCAAGACACCCCTCTCCTGCATAGCTCCTGCCTTGCCCAGAAGCTGACAATCACTTTGGGGATGGGGCAGCCGGGGGCGGGGAGAGAGGGCAGTTCCCAAGGGTCTGAATCATTGGTTCCCTTCAGAAAGGAAGTCTTTGTCATCGATGGTAAAATAGAATTCTTAGAATGGACAAACTCAGCCGTGTCCGGAGGGAAACCAAAACTAGGAGGTAGGCAGGGAGTCCTTATTTTTGCCTGCAGAAACAGAAACTGACTCGCTCGGTTGGACAATTAGAAAGAAGTGCCTTTGGGGTGGGAGGCAGGGGCACCAGACTGGGACCAGCTTCCCTGACTGCTGCTGTGGCTTCTGGCTGGGAGTGGGGAAATGGACCATCGCATGGCGACATCAGACTATATCAGAAGTGCTGATTTCCCCATGAGTGGGTCTGACCCCTCCACATCCACCTGTGAGCATTAAGGAGGAGGGGGAGTCCCTGAGGTAGGCTAGACGGTCCCTGCCATACACCTCAGCAACCATAGTGCCTTGCAAAGGAACCTCACCTCTCACTAGACACAGCTACCCACGTCCATCTGCTTCCCCGTCTTGGCTCAGGCAGGGCTCAGCAGATGGACACTGAGACCAGTTCTCAGTCCCACAGCTGCTGCCACTGAGGTCCCCAAGTGGGTCCCGGTGGAAGGAGAGTTGTAAAGCCAACTCCCAGGCCAGCAGGCATGTGGGAACTGGGGTCAAGTTTGTGGCTTCCTGTTGGCTTCTGTGAGCACGGCAACCTCCAACATGTGTTTTCCAGGCTACTGGGGAAGCCAGAGAGTTTAGGATGGCTGTTTGTACATCTGTCCCTCCTCCCCTGCTGTGCCCCAGAAGCTCTAGGCCTGAGGAGCAGGAAGGCAGGTGGGGTGCTCATCCCGCTGGGGAAGCTAGCACAAGGCCTGACCAGGTCCTGGACTCCTCAAGGCAGCATTTCACCCCTACATGACAATAGCTGCATTACTGCCAACCGATGGTACGACCCTGTGCACCTTTGAAGAGATTCTGGTTTTAAATTGCTGCTTTTAATAGTATTTGTTATATTAAAGTTATAATTGACGTGTCTGGTTTACAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874:ENSRNOT00000025528:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF140611=Mtf2_C=WD(100=44.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGATTCTACCGATGCTGC
R:
TCCGAGCCAACACCTGATACT
Band lengths:
347-1484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]