GgaINT1022206 @ galGal4
Intron Retention
Gene
ENSGALG00000024479 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr25:2071698-2073859:+
Coord C1 exon
chr25:2071698-2071711
Coord A exon
chr25:2071712-2073683
Coord C2 exon
chr25:2073684-2073859
Length
1972 bp
Sequences
Splice sites
5' ss Seq
CTGTTAAGG
5' ss Score
1.17
3' ss Seq
TATCTCTGTTTTTCTTCCAGCCG
3' ss Score
10.42
Exon sequences
Seq C1 exon
TAAAAGGAATTCTG
Seq A exon
TTAAGGAATTGGAGTGTTTGTGTTTACTTCTGTTGCTGTACTGCCTGATAAAGGACAGCGTTTCTGGAGAGAACAATGTGGCAGGTCCATACTCAGAGAAGGGGATTCAAATCACCAGACTGACTTGAGCATCTTTGTCAACCACTCTCTGCTTTAAATTGACTGAAACCCAAAGCCATCTTTTATTAAGTGAGTGTAAGTCCTCCCAGATGATTTTCAGGAGCGTTGTGAAGAGATTACATGATTGCCAAACCCGCTGTGTGTCTCTGGTTTCAATTCCCTCCTCTTCATCCCTCCTCCGAGACCTTTCCTTACAAAAACAGTGGATGCTGGACTCACATCGTCCTTTTCACTTGGACCCTGGAGCTCAGACAACAGCACTGGGTTTGTGCTCGTTGCTTCTGATCCTAAAGAAGCAAATGGTGCAGGATGGGCTGCTTCTGCGTGGTGTAATCTTCATGGAAACATTTGGATCCCATACGCTGAGGAGTGCCAGTCAGGCAGCATCCAGACTGTCAGTGCAGAGCATCTTCATTTAAAAGAAGCTGTTTTGGCTGTGGGTCAGAATGTTTTGGCACACAGCAGGTCTTTTCCTGGATTTCCACATTTGCATAGGAAACATTCTCCTTTAACATCAGCAGTTTCAGTAATGTTGGACCATTTTGTGTCTCCGCAACAATCTGGATGTTCTGTCAGTCTCATAAGTGTTGAATAGTGCTACCAGTCCTTTGGCACAGCTGCCCAGAGCAGTATGGATGCTGCATCCCTGGTGGTGCCCAAAGCTATGGATGGGGTCCTGGGCAGCCTGAGCAGGTGGGGAGCAGCCAGCCCATGGCAGGAGTGGGGCTGGGGGGGTGTGAGGAGCATTCCAACCCAACCATGCTGTTCTTTGGTTCTGTGATCTTTAAGGTCCTTCCCAACCCAACAGTGCTCTATGAAATCCACAGTGGGAAGATTCCTGTGTGGTTTCACTTAACAATTCTCCTTGTTCCAGTGTGGAAGCCCTTTTCCCTCAAGACATGAATTATAGTAGTAATGGTCTTTAAAAAATAACAAATCATACACTTTTGAAACCTGGACACGTTATTATTCCTCTATAAGAATTCTTTTGACATTCATCACTACGGTTTGTGTTGGGTAAACATGGATGCATGAAAGAGCTTTATGCCAAGAGGTAGAATGGTGCAGAGGAAGAAGGAGCTGAAGCCCCATTAAGTATTGTGCTCATTTTCTGGGTTATTTGAAATAATCATGGCCTCAATTTTTAATTTCTTTTTTTAATTATTATTTCCCTTCCCACATGATATTTAGAAAATGTGTTGGGTTCTGAGATGTTCTCGTGTTCTTACCATTCTGAGATGTTCTTACGACACAGCCCACATACTGTGATTGCAGTGGGAGCCAGATGTTTTCATATACTCCGTAATTCTTGTGTTGAAGCATGTCTGGTGCTTCATGAAAATTCAGTGCTGTAGTCCTCCTCAAGTCAGGGGATATTGGAGATGGCTTTAGGTGGTTCAGATCTCGTGTGTCCTTCTGGTTCTGGTTAATTGGCACTGAGCTGCCTGTGATTGGCAGTGCTGTTCACAAACTTGCACAGCGTTGCACCAGGGGCTGGAGTGAGTGGTTGAGCATAAATTTTCCCAGTATCTGCCAGCAGGTGATTTTGTGCTTAATAGTTAATGAGACTAAAAAAAATATTTTCTTTAGCTGCTGTGGTTGTGTTCAAAGGGCATGCAGGAGGCAGGGTAATCAATCTCTGAGGTTGCTCGGAGCGAAGGGTTTTGATCACCTTGTTCTTAGGCAGCTCAGAAAACCTGGCTCAAATGGGAGTTTTAAAGCAGTAGATAGAAGGGTCCGATAGTTTCACAAGTTTACTTTTAAAGCATGCTCTGAAAAAGTCATTCCAATTCTGCAGCAGCTTTTTTCACTGGCAGATACAACTTTTGCTCTATCTCTGTTTTTCTTCCAG
Seq C2 exon
CCGGCAACCCTCTTGTTCAGCAAGGCGGACAGCCCCTGATCCTCACCCAGAACCCAACCTCGGGTCTGGGCACCATGGTGACCCAGCCAGTGTTAAGACCTGTGCAGATCATGCAGAATGCCAACCATGTCACAAACTCCCCGGTGACCAGCCAGCCCATCTTCATCACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479:ENSGALT00000041392:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]