RnoINT0114697 @ rn6
Intron Retention
Gene
ENSRNOG00000053599 | Pogz
Description
pogo transposable element derived with ZNF domain [Source:RGD Symbol;Acc:1309980]
Coordinates
chr2:196015818-196020143:+
Coord C1 exon
chr2:196015818-196015976
Coord A exon
chr2:196015977-196019967
Coord C2 exon
chr2:196019968-196020143
Length
3991 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GCCTGCCTTTTGCTTTTTAGCTG
3' ss Score
9.84
Exon sequences
Seq C1 exon
TTTCTGTGAGCCAGCAGCCAGTCTCAGCTCCAGTGCCCATTGCTGCCCATGCTTCTGTGGCTGGGCACCTCTCTACATCCACTACTGTTAGTAGCAGTGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTTACACTAATTGCCAACAACAATG
Seq A exon
GTAAGTGGGATTATTGGGAAAGCATTCTGGGATAGAGGCATGAGAGAATAAAAAATGACCTCACAGCTAGCTGTTCCTGTTCCCATGGCTGTGCTAGCTGGAGGTCTCTTTGGAACTGTTTGCTGTGGAAGGAGCGCTGCAGATGACACTGTCCCTTCAGTCAGTGCTGGATTGAGTCAGGTCAGCAGATTGTTGCTGCTGGTAACTTCTGGGAAGATGAGCTCGACATTGCTAACTGTTCTAGAGATCTGGGGCTGTTGGTTGGTTGGTTTTGTTTGCACGCTTGCACTCGCAAATGAATGCAAGCATACACAGACGCGCATACTCTCTTTAGTTCAGAGGCGTCCTGTTCATATGGTTCAGAGTTTTTCTAGGCAGCTTTGTGGTGTTTATTTGCTTTGAGAGATTTATTGGATGTTGTTGGCTCCTCGGTATAAAGGAGAAAAGTTGTTTCTGCTAGAATGAAATGGTGAAAGAAGAGCATTTTCAGGGCATTTTCTTGGTCAGAGAAAGTACAGTTGGTTTGCTGTTTTAAAGCAGGGTCTCATGTAGCCCAGGCTGGCCAATTACTCAGTTTGTTTGTTTGTTTTTTTTAAATATGTGTATAGGTGCTTTGCCTACATAAATGTCTATGTGCCACTTACATGTCTAATGCCTGCTGAGGGTGTTGGGGCCCCTGGAACTGGAATTACAGATGGTTGTGAGGTGCCATGAGTGTGCTAGGAATGGAACCTGAGTTCTTTGTAAGAACAAAATATGCTCTTTAAACTACTGAGCCATCTGTCCAGCCCTAGCCTTGGACTCTTGATCTCTACCTGTACCACCAATTCTCAACTTCTGTTCCATGATCAATAACTTTCTGCATACTGAGGATGATTCCTGATAGTTTGCATTTTAGGATTCAGAGCAACAGATACTTTCATAGCCTCATTGTATTGCTACAAGAACTTTATTTGTTGCTTTTTTGAGATTGGGTCTTTGTATATAGCTCTGGATGGCCTGGAACTTGGCATGTAGACCAGGCTCTTCTCAAAACTGCAGAGATCCACCTGCCTCTGCCTTCTGAATGTGAAAAAGGCATCTCCCACCATGTGCTCAGTGTTTTTGTTTGGTTGGTTTGGGGTGGGGGCTGGATTTGTTTGTGTGTGTGCGTTATTAGGAACTGAGTGAACATAGTTGTCTTTGTCATGCTGTGTGTCATCCCCCCCACACACACACACACATACACACACACGGGGAATTGAATATAAGGCCTCACTCTTGCTGAGGTAAATGAACACTCTAGCACTGAGCTATATTCTCATTTCCAGCCCCCTTTTAAGTGTTTATTTTGAGGTAGAATCTAGCTAAACCGCCAAGGCTGGCCCTAAACTTGGCTCCTTCTGCTTTGTCTGTCTAAAGAGGGATTTTGTTTCCTTTAGAAATAAAATTTATTGTTGTAAGAATGTTATGTGGGGCTGGGGATGTAGTTCACTTAGAATGCATGCACAAAGCTCTGGGTTAGGTCCCCAGCACCACCTAAATGGTGGTGTAGCACATCCATCTAATCTAGCATTCCACAAGTTGGCAGGAACATCAGAAGTTAAAGGTCATCCTTGGTTACATAGCGAATTTGAAGTCATCCTGAGCTTCATGCAACACTGTCATAGAAAAAGAAGAACAGGAGCTGGAGAAATGGCTTACTCATTAAAGTGCTCGCCACACAAGCATAAGGACGTTAGATTCCCAGGACCCATGTAAAGTCTTGGGTACCAAGGAGGTGGAAAGAGGTAGATCTTTGGAGTTCAGTGTCCAGCCTAGCCTTCTCATCCAGCTCTAGGTTAGTGAAAGACTTTGTCTAAAACCAAAGCCAAAATGAGGCAGACAGCACCCGAGGCTAATCACTGCCCTCCACCAGCATGCATACGTGCATTCACATGCATACACACAATAAAAATATGTGCATTATAGAAAATGCTAGAAACAGGGCAAGGTGTACATGCCTGTGATCATAGTACTCAGGATTGTGAGTTCAAAGCTAGTCTGCTATATAGCAAGACCTGTCTTAAAGAACTTTAGGAGAGAGGAAAAACAGAGAAAATCTAGGCAACAAAGTCAAAATGGGTGGAAGGTTAACTGTCCTATCTCATGGAATGACTATAATTCATTTATGCAAACAGTTTTTTCTGTACTTTTTTTATAAAAATAGAATCATATAGACCATATTTCCCCTGCTTTTATTTATCTTGTAATATGTAGTGAGTACTTTATCATTTTGATAGTTACTTATTACTTTAATTGTCTTATTGTTTGTTTTAGATAGGGTCTTACCCTGTAACTCTGGCTAAGAATTCACTCTGTAGACTAGACTGGTCTGGAACTCAGAGAGATTTATCTACCTCTGCCTCTGCCTCCCAGATAATGGGAATAAAAATGTGTGCTCCCATGCCTGGCTGTTTTGCTTTTTAAATTAGTTTACTTATTTTATGTATATCAGTATTTTGCCTGCACATGTGTCTGTACACCCTGTGTGTGCCTGGAGCCATTGTAGGTCAGAAGAGGGTAAACAGGAATTACAGATGTTGCAATGGGCATTGAACCCACATCCTCTGCAAGAGCAGCAAATGCTCTTAGCTAACTTTAACCCGAACCTTAACTGCGGAGCCAACTCTCTGTCTTTTGCCTTCTATTTTGTTTTTGAGGCAGGTTTGAAGCTCAGGCTAGCCTTGAACTTCCTATTTCACTGAGGCTAGCCTTGGATTGCCTCTATTTCTTAAGTGCTAGATTTACACGCACGCACGCATCCTTGCACTCGTGTGCGCACACACACACTTTGGTTTGTTTTGGTTTTGAGCCTTGGTGTACTGTTCTCATGGTTGGCTTCAAACTAACAAGGATGGTCTTGAGAGGCTTACTGTCCTGATATCAGGATCACAGGCATGCACTGCAAGCCTGCCTTGTGCAGTGCTGGGGTTTGAAGCAAAGGCCTCATGTGTGCTGGACAAGCACTCTGCCAACTATGCTACGTTTCCAGCCTTTTGTAACACTTTTGATAACCATTATTTGATTAGCATATTTACAGTAGATTATAAAAAAGATACATTGAAGTTTCATTTGTACAGAGCTACAGTGAGCACTGGATATAAATGTGCATATACAGCCTGTACTCAGGAAGGTGGGTTGAGAGTATTGGCTGGGTTTGGAGCCAGCCTGGGCTATAACAAGGCTGTCTCAGAAAACATCTCCTCCAATAAGGCCACATATCCCATTCTTTCTCCAGCTGCTCCATTAACTGCAGCCCAAGCACTCAAACATAACAGCTTACAGGAGCCATTCTCACCCAAACCACCACAGTTGCTATTTCCTGTAGAAGAATGTCTCGTGTTATTTTGGATCAAACTAAATGTGAACCTTTCTCAAACAACAACAAAGTGGTTTAGGGCTGGTGAGATGGTTCAGGGAGTGAGTAAAGGGCACCTGCTGCCACTAAGCTTGAGTACCTGAGAGCTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACTAAGCAAATGTAAAAAAGGAAAGTTTAAAAGGGGGTTAGCCAACAACAAATTACTTTCTTACAAAAAGATTTTACTTTAAATTTGGAAAGTCTTACCTTTTTTGGCTCTGCTGACTGGGGAGAAGTGTGTGATGACTTAACTCATTAGTCTGAAGATAGGAACTGGTGCCTCTCAGCCTTGGGCCAGGCACGGGTGGGTTAGTGAGCTTGTATTCTGTTAGTTGTAGAGTTGAGTGAAGCTTAAATTGTGAGTTTAGTGACATTAAGCCTGAAGTGAGTAGTAGCAGTTAAGTAATTTTGATATTTGAGACACTAATTCTTAACTGAGATAATAATGTTTTTATGAATACAAGTTTAGCATTGTTTCTAACATCCCTTTCATGTTCTGTTTCCCTTTGTTTTGCCTGCCTTTTGCTTTTTAG
Seq C2 exon
CTGGTAATACTTTGGTCCAGCAAGGTGGACAACCACTCATCTTGACCCAAAATCCAACACCGGGTCTGGGAACAATGGTTACTCAACCAGTATTGAGACCTGTCCAGGTCATGCAGAATGCCAATCATGTGACTAGCTCCCCTGTGGCCTCACAACCTATCTTCATCACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053599:ENSRNOT00000082849:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=NA C2=0.616
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]