GgaINT1023086 @ galGal4
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11585856-11586143:+
Coord C1 exon
chr12:11585856-11585922
Coord A exon
chr12:11585923-11586017
Coord C2 exon
chr12:11586018-11586143
Length
95 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GTGCTGCTTCCCCCCCTTAGGAC
3' ss Score
11.21
Exon sequences
Seq C1 exon
GTTTTTGCACAAAAACCCCGAGGACCCTTCGGAGGTGCCGGGTGGATTCCTGAGCGACCTCAACCCT
Seq A exon
GTGAGTGCCAGCGGTGATGTGCTGCAGCCCTCGTGTCCTCAGCGCTGGCACGCAGAGGGGCTGAAGGTGCTGACAGTGCTGCTTCCCCCCCTTAG
Seq C2 exon
GACTCCCTACGTGTGGTGGACGATGCCCTGGTTGACAGCTCTGTCCTCGGGGCACGGCCCTTTGATAAGTTCCAGTTTGAGCGCTTGGGCTACTTCTCAGTGGATCCTGACAGCACTGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(11.7=100)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=PD(18.1=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAACCCCGAGGACCCTTC
R:
GCTGTCAGTGCTGTCAGGATC
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]