RnoINT0121193 @ rn6
Intron Retention
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117304754-117305018:+
Coord C1 exon
chr8:117304754-117304820
Coord A exon
chr8:117304821-117304892
Coord C2 exon
chr8:117304893-117305018
Length
72 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
3' ss Seq
CTTGGATTCTCTGTCTGCAGGCA
3' ss Score
8.22
Exon sequences
Seq C1 exon
ATTCCAGCACAAGAACCCTGAAGACCCTGTCGAAGTGCCTGGTGGATTCCTAAGTGACTTGAACCCG
Seq A exon
GTAGGCTCTGGAATGTGAGGTGAGGGTGGTGGGCTTTTGAGCTGGATAGCCACTTGGATTCTCTGTCTGCAG
Seq C2 exon
GCATCACTACAAGTGATTAAAGGAGCGTTGGTGGACTGCTCTGTGGCTTTGGCAAAGCCCTTTGACAAGTTCCAGTTTGAGCGCCTTGGGTACTTCTCTGTGGATCCGGATAGCCATCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(11.7=100)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=PD(18.1=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCTGAAGACCCTGTCGAA
R:
TGGCTATCCGGATCCACAGAG
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]