Special

HsaINT0135711 @ hg38

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49097992-49098258:-
Coord C1 exon
chr3:49098192-49098258
Coord A exon
chr3:49098118-49098191
Coord C2 exon
chr3:49097992-49098117
Length
74 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CCTGAGTTCCCTGCCTGCAGGCA
3' ss Score
7.6
Exon sequences
Seq C1 exon
ATTCCAGCACAAGAACCCTGAAGATCCTACTGAGGTGCCTGGTGGATTTTTAAGTGACCTGAACCTG
Seq A exon
GTAGGTTCATGAGGTTTGGGGTGAGGGAGGTAGGCCTCCCTGGTTGGATGGTTGCCTGAGTTCCCTGCCTGCAG
Seq C2 exon
GCATCACTACACGTGGTGGATGCAGCATTAGTGGACTGCTCTGTGGCCCTGGCAAAACCCTTCGACAAGTTCCAGTTTGAGCGTCTTGGATATTTCTCCGTGGATCCAGACAGCCATCAGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053:ENST00000306125:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.099 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0395013=tRNA-synt_1c_C=PD(15.9=91.3)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=PD(18.1=81.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTACTGAGGTGCCTGGT
R:
TTCCCTGATGGCTGTCTGGAT
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development