MmuINT0130121 @ mm10
Intron Retention
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108514967-108515232:+
Coord C1 exon
chr9:108514967-108515033
Coord A exon
chr9:108515034-108515106
Coord C2 exon
chr9:108515107-108515232
Length
73 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
3' ss Seq
CTTGGATTCTCTGTCTGCAGGCG
3' ss Score
8.19
Exon sequences
Seq C1 exon
ATTCCAGCACAAGAACCCCGAAGACCCTGTTGAAGTGCCTGGTGGATTCCTAAGTGACCTGAACCCG
Seq A exon
GTAGGCTCATAGAATGTGAGGTGAGGGTGGTGGGCTTCTGAGCTGGACAGCCACTTGGATTCTCTGTCTGCAG
Seq C2 exon
GCGTCACTACAAGTGGTAGAAGGAGCATTAGTGGACTGCTCTGTGGCTTTGGCAAAGCCCTTTGACAAGTTCCAGTTTGAGCGCCTTGGGTACTTCTCTGTGGATCCAGACAGCCATCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604:ENSMUST00000006838:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(11.7=100)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=PD(18.1=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAAGACCCTGTTGAAGTG
R:
ATGGCTGTCTGGATCCACAGA
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types