GgaINT1023376 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11194194-11195402:-
Coord C1 exon
chr15:11195265-11195402
Coord A exon
chr15:11194333-11195264
Coord C2 exon
chr15:11194194-11194332
Length
932 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
3' ss Seq
AATCCCACTCCCACGAGCAGGCA
3' ss Score
2.67
Exon sequences
Seq C1 exon
GAGGTGCAGTACTTCGCCATCAGTGGGTTCCTCTTCCTCCGCTTCTTTGCCCCTGCCGTCCTCACCCCGAAGCTCTTTGGTCTGCGGGAGCAGCATGCTGAGCCCCGCACTGGGCGCACACTCTTGCTGCTCGCCAAG
Seq A exon
GTGCTCAAGGGAACGAGGACGTGGTGGGGGGACCTTGGGGAGGGATGGGGATTTGGGGCAAGGATGAGGCACCAAGGAGGGACGGGGACCAGAAGGAAAGATGTGGGTCCAAGGAGGGATAGGGTGGAAGGACAGGGACCAGAGGGGGAATGGGGACACCATGATGGATGGGGACACCAAGAGGGATGGAGACCCCAAGGTAGGTGAGGACCGCATAGGGTCAGGGAAACCCTGGAGAGGGATGGGACATCAGGGAGGGTCTGGGATGGCCAGGAGGGATGGGGACCCAGGGAAGGGATGGAGACCCTGTGGGAGGATGGGGTACCAGGGAGGTTGGGACCCCAAAGAGGGACAGGGGCCTGAAGGATGGATAGAGGACCAAGGAAGCATGGGGTTGCCATAGAAGGACAGGGACCCTGGGGGGAGGATGGGGACCCTGGAAAGGGATGGGGACCTTGGGGAAGGATAGGGATCCTGGGAAGGGATGGGGCACCAGGAAGAGATGGGACCCCAAAGAAGAACAGGGACCTGAAGGAAGATGAGGGACCAAGGGGAGATGGGGATGCCATGTCAGGACAGGGACCATAGGGAGGAATGGGGAACATAGAAGGGATGTAGACATCGAAAGGGATGAAGACCCCAGAGGGGATGGGGATGCCAAGGTGGAAAGGGGACCCCAGAGAGTCTGGAAGACCCTGGGGAGGGATGGGGATCTTGGGGGAGGGCAGAGACCAAGGAAGGAACACGGACCCCAAGGAGGGCAGAGCCTTTCCTGCCCCCACGCCACATGCCATGAGCTGCTTTGTTCCCACTGCGGGTACCACCAGTCGCATCACCATGCACTGAGCACAGGGCAGCAGCCAGGGTTGGCTTCCACCACCTCGTGCTGCTGTTTCCCCATTTTCCTCCCCAAATCCCACTCCCACGAGCAG
Seq C2 exon
GCACTGCAGAGCATCGGCAACTTGGGGCTGCAGCCGGGCAAGGAGCCCTGGATGGCCCCGTTGCACACCGTCCTGCTGCCCAGCATCACTCGTGTCAGAGCCTTCCTAGACAGCCTCATCGAGGTGGACAGCACCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
NA
C2:
PF0061614=RasGAP=PD(3.2=12.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000013239fB11311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCAGTACTTCGCCATC
R:
GTGCTGTCCACCTCGATGAG
Band lengths:
272-1204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]