MmuINT0132017 @ mm10
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120670276-120671685:+
Coord C1 exon
chr5:120670276-120670413
Coord A exon
chr5:120670414-120671540
Coord C2 exon
chr5:120671541-120671685
Length
1127 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TCTTCTCTTCTTTGCTCCAGGCT
3' ss Score
9.64
Exon sequences
Seq C1 exon
GATGTGAAGTACCTGGCCATCAGTGGCTTCCTCTTTCTGCGGTTCTTTGCGCCTGCCATCCTCACACCGAAACTGTTTGACCTCAGAGACCAGCACGCAGACCCCCAGACCAGCCGTTCCCTGCTGCTGCTCGCCAAG
Seq A exon
GTGTGTTTGTGTGTGAGTGTGTATATATGTGTGAGTATGTATATGTATGAATGTGTGTGTGCACGTGTGTATGTGTGTATAGGCATGTGTGTGAATGTGTGTGTGTGAATGTGTGTGTATGTGTGTCAGTGCATGTATGTATGTGTGTGTGTGTATAGGTATATGTGTGTATGAGTGTGTATATGTGTTTATGTGTGTGTTTATGTGTATTTGTGTATGTATATGTATATATGTGTGTATGTGTGAGTATGTGTATGTGTGAGTGTACGCATGCATGTATGTATGTATGTATGTATGTGTGTGTGAGTGTGTATGTATGTGTGTGTTTTTGTGCATGTGTGTATGTATGTGTGTGAGTGTATATGTGTGTGAGTATGTATGAGTGTGTGTTTGCGTGCATGTGTGTATGTGTGTGAGTGTGTATATGTATGTGTGTGAATGCATGTGAATGTGTGTGTATATGTGAGTGTATGTATGTGTGTCAGTGTATGTATGTATGTGAGTGTGTGTATGTGTGTAGGTATGAGTGTGTATATGTGTGTGTGTATGTGTGTGTGAGTGTGTCTTGTTCCCATGTCATGGACTTGCTGGGCCACTGAGACTTGCCATATCACCCAGGCTGGCCTAGGGCTCAAGGCAATCCTCCTGCCTCAGCCTCTTAAGTGCTGAGATTCTAAATGTACCACTGTGCCTAGCTTTCATTTGCTTCCCCCTCCTTTTGGCAGTCCTGGGAACTGAACATGGGACCTTAGGGGTGGTTGGCAATCACTCTACCACTGGGCTACAGCCTCAGCGCCTAACCCTCCTCCTCTTCCTCCTCCTACACTTAACTAGACCATCAAAACTCACGCCTTCCAGAAGAAACAGGAGAGGTGAACCAGCAGTCATTTATACCTTAGTATGAACTAAGCTATTCTTGACAAAGTACCTACAACTGTGGCTCTTGTGGTTCCCCAAGTTCACTTGATAGAAATGGGCAGTGCCAGGTGCTGGGTGTGCTCATCTGGGCAGGAGCTGGGGGTGCTGATCCCAAAAGGGGGGATCAGACAGTGCCCAAGGAGTATGAGTGAGAGAAGCAGAATTTGGGGCCTCACTGTGCACTTGGCCTCTTCTCTTCTTTGCTCCAG
Seq C2 exon
GCTGTGCAGAGCATTGGGAACCTGGGCCAGCAGCTGGGCCAGGGCAAGGAGCAGTGGCTAGCCCCGCTCCATCCCTTCCTGCTGCAGAGCATCTCACGTGTGAGGGACTTCCTGGACCAGCTGGTGGATGTGGACGAGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602:ENSMUST00000031606:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
NA
C2:
PF0061614=RasGAP=PD(3.2=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTACCTGGCCATCAGTG
R:
CCTCATCCTCGTCCACATCCA
Band lengths:
280-1407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types