HsaINT0137686 @ hg38
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113107097-113108222:-
Coord C1 exon
chr12:113108085-113108222
Coord A exon
chr12:113107242-113108084
Coord C2 exon
chr12:113107097-113107241
Length
843 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
CCCTCGCTTCTTTGCTCCAGGCT
3' ss Score
8.63
Exon sequences
Seq C1 exon
GATGTGAAGTACCTGGCCATCAGTGGATTTCTCTTCTTGCGATTCTTCGCACCTGCCATCCTTACCCCAAAGCTGTTTGACCTTCGGGACCAACACGCGGACCCCCAGACTAGCCGCTCACTGCTGTTGCTTGCCAAG
Seq A exon
GTGCCAGCCATGGGTTTCCCCCATCCTAGGTACTTTAGCCAGGGAAAAAAGCATGGTAGGAGCAGAGCTGGGAGGCCAGACCCACAGAAGACCCAAAGAACATCCGAAGAAACCCAAGTCTGAAACACCACCGTTAGCATTCCATCCCAAGGGTGAAGGCAGTCATCATGCACTCCAATTTCCCCTTTGGGAATGAAAACCCAACCCTTCCAGAAGGAAAGTGGAAAACAGGCTAGCAGGCATTCACACCTTAGTATGAATTAGATCATCATTTGCAAAGGGCAACAACTTGAGATTCTGCATGAGAGTACCATGGTAGGACTGAGCAGTTCTTGGGGAGGATCTGGGCTCGGGAGGGAACAGAATAAGGTTAGTGGGGAGTGCAGATTCCAAAAAGAGGAAGGGGAAACAGACATCACCCAAGGAAGGTGTTGAGTCTTCTTATTGATTTATTTTTTTCCTTGAGACAAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAACCTCTGCCTCCTCGGTTCAAGTGATCTTCCCACCTCAGCTTCTGGAGTAGCTGGATTTACAGGCGTGAGCCACCACGACCAGCTAATTTTTGCATTTTTAGTAGAGATGAGGTATCACCATGTTGGCCAGGCTCGTCACAAGCTCCTGACCTCAAGTGATCCGCTTACTTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCGGCAATATGAGTCTTCTTTTATTGAGCACTGATTTGGGAGCCAGGAGGGGCCCTACCCTCTGCTGTGACCTTGGCCCCGGCATCCCTCGCTTCTTTGCTCCAG
Seq C2 exon
GCTGTGCAGAGCATTGGAAACCTGGGCCAGCAGCTGGGCCAAGGCAAGGAACTGTGGATGGCCCCCCTGCACCCCTTCCTGCTGCAGTGTGTCTCACGTGTGAGAGACTTCCTGGACCGGCTGGTGGATGTGGATGGGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344:ENST00000261729:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
NA
C2:
PF0061614=RasGAP=PD(3.2=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTACCTGGCCATCAGTG
R:
TCATCCCCATCCACATCCACC
Band lengths:
278-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development