GgaINT1023386 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11195961-11196360:-
Coord C1 exon
chr15:11196207-11196360
Coord A exon
chr15:11196026-11196206
Coord C2 exon
chr15:11195961-11196025
Length
181 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
CACGGTGGGCTCCCTCCCAGCGG
3' ss Score
4.71
Exon sequences
Seq C1 exon
CCCTCAGCCAGCACGGCACTGGCTGTCCTGGAGGAGGTGACCTCAGGGGACAGCAGGCAGGACGTGGCCACCAAGCTGGTGAAGGTCTTCCTGGCTCAGGATCTGGCCGTGCCATTCCTGGACTACATCATCACCCGTGAGCTGACCAGAACCG
Seq A exon
GTAAGCGCAGGGGGCAGACCAGGCAATGCAGGGGCTGGAGCACCTCCTGCAGACCCTCAGCCGGGGAACTAGAAGGGAAACCACCCCGAGGGCTGCCAGGGTGATCCAGAGCCTGCTGTGAGGTTGGGCACACCGAGGACATCTGGGGCACCCCCATGGCTCACGGTGGGCTCCCTCCCAG
Seq C2 exon
CGGACCCCAATACCCTTTTCCGCTCCAACTCTTTGGCCTCCAAGTCCGTGGAGCAGTTCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.0)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000013239fB11311
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCTGTCCTGGAGGAG
R:
TTCAAGAACTGCTCCACGGAC
Band lengths:
202-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]