HsaINT0137683 @ hg38
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113115200-113115788:-
Coord C1 exon
chr12:113115635-113115788
Coord A exon
chr12:113115265-113115634
Coord C2 exon
chr12:113115200-113115264
Length
370 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
ACTTCCTCCTGTCCTCCCAGTGG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GAGGACACTGCTAGCCCCTTGGCTTTGCTGGAAGAGCTGACCTTGGGGGACTGCCGCCAGGACCTTGCCACCAAGCTGGTGAAACTCTTTCTTGGCCGGGGACTGGCTGGGCGCTTTCTGGACTATCTCACCCGGCGTGAGGTGGCTCGGACCA
Seq A exon
GTGAGTTGCCCGCACAACCCCCGACATCACCGCCCTCAATGGTGGGCTTGCAGGAGGGTCCTGGGGGAGGAATGGGGAGGCCTCAGGCAGAGGGAAAAAGGGCTCCTTTTTCTGTGGGTCCCTGTGCTGTGCACCTCCAGACAGTTGGGAGCCCAATTGCAGGTTCAGGCCCTGGCTTTGCTACTTGTGGGCTGTGTGACCTCAGGCAATTCACTTAACCACTCCGGGCCTCTGTACTGTGAATGGGGTTGATGTTTTGGGTCTTCCTGATTCTTGGGGCTGGAAGAATCATGACTCCCACCTTGGGTGAGTGGGGTGAGCTGGGTTCAGCTCCCTAAATCCCAGCAAACACTTCCTCCTGTCCTCCCAG
Seq C2 exon
TGGACCCCAACACCCTCTTCCGTTCTAACTCCCTGGCATCCAAGTCGATGGAACAGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344:ENST00000261729:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.0)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACACTGCTAGCCCCTT
R:
TAAACTGTTCCATCGACTTGGATGC
Band lengths:
214-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development