RnoINT0124480 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41431652-41432211:-
Coord C1 exon
chr12:41432058-41432211
Coord A exon
chr12:41431717-41432057
Coord C2 exon
chr12:41431652-41431716
Length
341 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CACCTTCCCTATCCTCCCAGATG
3' ss Score
9.75
Exon sequences
Seq C1 exon
GAGGACACCACCAGCCCCCTGGCATTGCTAGAGGAGTTGGCCTCTGGGGACTGTCGTCAGGACCTTGCCACCAAACTGGTGAAGCTTTTCCTGGGCCGGGGCCTGGCTGGGCCCTTTCTAGATTACCTCACAAGGCGTGAGGTGGCACGAACCA
Seq A exon
GTGAGTTTCTCCCCCAGAGTCCCAGATGCCACTCCCCAAGAATGGGTCTGTAGAGGCTCTCAGGAAGGGGTGGGAAGTAGCGTCCCTTGGTGACTCTTATGTGTTGGGGAGTCTGTGCTGCAATCCCTGGAGGGCTGAGAGTGCAGATCCAGCTTCAGGTGCTGTGTGACCCCAGGCAGCTTGCCAAACCACTCTGGGCTTCTGAATTGTGAACACAGTTGACACTTCGGGTTCTTCCTGATTCTTTCGGCCTCAAGAATCAAACCCCCACCATGGGCGAGCGGGGTGAACTGGGTTCAGCCCCCTCCACCCCAGCAAATACACCTTCCCTATCCTCCCAG
Seq C2 exon
ATGACCCCAACACCCTCTTCCGTTCTAACTCCTTGGCATCCAAGTCGATGGAACAGTTCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.0)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACACCACCAGCCCC
R:
TGAACTGTTCCATCGACTTGGA
Band lengths:
214-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]