MmuINT0132013 @ mm9
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121113980-121114519:+
Coord C1 exon
chr5:121113980-121114133
Coord A exon
chr5:121114134-121114454
Coord C2 exon
chr5:121114455-121114519
Length
321 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
ACATCTCCCTATTCTCCCAGATG
3' ss Score
8.63
Exon sequences
Seq C1 exon
GAGGACACCACCAGCCCCCTGGCTCTGCTAGAGGAGCTGGCCTCTGGGGACTGTCGTCAGGACCTTGCCACCAAGCTGGTGAAGCTGTTCCTGGGCCGGGGCCTGGCCGGGCCCTTTCTAGATTATCTCACAAGGCGTGAGGTGGCTCGAACCA
Seq A exon
GTGAGTTTCCCACAGGGTCCCAGATGCCACTCCCCAAGAATGGCTCTGCAGAGGATCTCCAGGGGAGAAACTAACTCTTATGTGTCGGGGAGTCCATGCTGTGATCCCTGGGGGGCTGAGAGTCCTGGTCCAGCTTCAGGTGCTGTGTGACCCCAGGCAGCTCGCCAAACCACTCTGGGCTTTGGAACTGTGAACACAGTTGACATTTTGGGTTCTTCCTGATTTTTGAGGTTGAAAGAATCAAATCCCCACCATGGGTGAGTGGGGCGAGCTGGGCCCATTCCCCTCCACCCCAGCAAACACATCTCCCTATTCTCCCAG
Seq C2 exon
ATGACCCCAACACCCTCTTCCGTTCTAACTCCTTGGCATCCAAGTCGATGGAACAGTTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-Rasal1:NM_013832:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.0)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACACCACCAGCCCC
R:
TGAACTGTTCCATCGACTTGGA
Band lengths:
214-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: