GgaINT1024405 @ galGal4
Intron Retention
Gene
ENSGALG00000014179 | SBK1
Description
SH3 domain binding kinase 1 [Source:HGNC Symbol;Acc:HGNC:17699]
Coordinates
chr14:12938587-12940293:-
Coord C1 exon
chr14:12940091-12940293
Coord A exon
chr14:12939376-12940090
Coord C2 exon
chr14:12938587-12939375
Length
715 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACCGCGTCCCACGGCCGCAGGTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GCACCAAGATGGCCCTGAAGTTCGTCAACAAGAGCAAGACGAAGCTGAAGAACTTCCTGCGGGAGTTCAGCATCACCAACACGCTCTCCTCCAGCCCCTTCATCATCAAGGTCTTCGACGTGGTCTTCGAGACAGAGGACTGCTACGTCTTTGCTCAGGAGTACGCCCCAGGAGGGGACCTCTTCGACATCATCCCCCCACAG
Seq A exon
GTGAGAGCTGTTCTGGGTGCTGGGGTGGAGACACGAGGGCTTGGTGTCCCCGGACAAAGCCACTGTGCCCGGGCTTGCACATTGCTGGTGGCACAAGAAGGGGCCCTGGTGTTTGCACAGCCCCAATGAGGGGATCACACATCTGTACACGGGCAGAATGCCGACACTTAGATAGTGCAGCACCTAAAAGCAGGCTTGGGACCCATTGCTCATCCCCTGGGTGGCCTGGGACCCATAACCTTTCCCATTGCTGGCATGAGACCCACCACCCATTCCTTGGGTGTTCTGAGACCCATAACTGATGGCTTTCCCATCCCCTGGATGGCACGCAACCTGTCTTCTGGGTGTTCTGGGACCCATAAGTGATGGCTTGAGACCCATCAAGAAACCACAGTGTGGTCCAAGACACATAACTTGTAGCCTGGGACCCATAACCCTTCCCATGGGTGGTCTGAGACGTGTCACACGTCCTAAGTGACCTGGGTCCCATAAGTGGTGGCCTGGGACACATCATGTGTCCTCGAGAAGGCATGGGACCCATCCGCTGGCCCTGGTGGCTCAGTCCTGCTGCAGCATATCTTTTCTTCCCCTTAAGTAGAAGGGACAGGAAGGAGGAGGGAGGGCAGTGAGTGGGAAAGGTGCAAAGAGAGAGACGGGGGGCACACGGGTGGGCCGTCAAGGGGCGGCGTGGAGTGACCGCGTCCCACGGCCGCAG
Seq C2 exon
GTGGGGCTCCCCGAGGACATGGTGAAGCGCTGCGTGCAGCAGCTGGGCCTGGCGCTGGACTACATGCACAGCAAGAGCCTGGTGCACCGGGACATCAAACCGGAGAACGTGCTGCTCTTCGACCGCGACTGCCGCCGCGTCAAACTGGCCGACTTCGGCATGACCCGCAAGGTGGGCTGCCGGGTGAAGCGCATCAGCGGCACCATCCCCTACACGGCGCCCGAGGTGTGCCAGGCCGGCCGCGCAGAGGGCTTCGCCGTGGACACCAGCATCGACGTCTGGGCCTTCGGGGTGCTCATCTTCTGCGTCCTCACCGGGAACTTCCCCTGGGAGGCGGCGGCCGCCTCCGACACCTTCTTCGAGGAGTTCGTGCGGTGGCAGAAGGGCCGCCTGGCGGGGCTGCCCTCGCAGTGGCGGCGCTTCACGGACAGCGCGCTGCGCATGTTCCAGCGCCTGCTGGCCCTCGACCCCGAGAAGCGCTGCCCCGTCAAGGAGGTCTTCTACTTCATCAAGTACGACCTGATGGCCGAGGTGCGCCGCCGGCCCTCCTACCGCTCCCGCAAGCACGCCGGGGACAAGCTGCCCGCCGGGCCGCACCGCCACGAGCCCACCGCCTCCTGCACGCCCACCCCGCTCAAGAGGACCATCCTGACCGACGGCCCCGGCACGCGGCTCAACGGCCCCGAGCCCAGCGCGGCCTCGTCCGGCCCGGCCGGCAGGACAGACGGACGGCAGGACAAGGGCAAGGGGCAGATGGTGCTGGCCACAGCGATAGAGATCTGTGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014179:ENSGALT00000022935:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.252
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.8=100)
A:
NA
C2:
PF0006920=Pkinase=PD(64.6=63.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGACAGAGGACTGCTACG
R:
CAGACGTCGATGCTGGTGTC
Band lengths:
358-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]