MmuINT0139068 @ mm9
Intron Retention
Gene
ENSMUSG00000042978 | Sbk1
Description
SH3-binding kinase 1 [Source:MGI Symbol;Acc:MGI:2135937]
Coordinates
chr7:133434557-133438513:+
Coord C1 exon
chr7:133434557-133434759
Coord A exon
chr7:133434760-133435338
Coord C2 exon
chr7:133435339-133438513
Length
579 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
GTTCTCTCTGTTCCCAACAGGTG
3' ss Score
12.12
Exon sequences
Seq C1 exon
GCACTAAAATGGCCCTGAAATTTGTGAATAAGAGTAAGACAAAGCTGAAGAACTTTCTGCGTGAGGTGAGCATCACCAACAGCCTGTCGTCTAGCCCCTTCATCATCAAGGTCTTTGACGTGGTCTTCGAGACCGAGGAGTGCTATGTCTTTGCCCAGGAGTATGCACCTGCTGGGGACCTGTTTGACATCATCCCTCCTCAG
Seq A exon
GTACTTCAGAGAGTGGCAGAGAGAGGGGAGATGGGCTTTGGGGCTGCCAGCGTATGGAAACCTGGAAGGAGTTGGATCAACCGGCAGGCTGGGTATTGTATGCGTACCTGTCACACCTCTAATCCCAGCAATTGGGAAGTAAAGCAGAGGCAGGAAGATCATGGGTTCTGTACCATCTTGGGCTGAGTAGTGAGACCCTATCTCAGCAAATCCGGAAGTGTAGCTTAGTGGTAGTGTTTGTCTAGCATACATATAAGCACTGCAAATAATAAATATGCAAGTGACCAAGCATTGAGACCGCAGAGGTGTCTCTGGAGCAAATGGGGGAGGATCCTAGTGCTTAGTTGGGGTCTTTCCACTTGGGTAAAGTCGAAGTCAAAAGCCACCTAGCAGAGGAACAGGACGGGTATCCTACCAGGTCCGGAGGAGGACAAACAGGCACCAGGATCAGGGCAGGTTCAGAGGCCAACAGGAGAGTTGTGACCTCCAAGTGGGCAACTGACAGGGTCTCAAAGAAGGAACTGGGGCAGGGCCGGCGGGCCTGGTCTACCCCTGAGCAGTTCTCTCTGTTCCCAACAG
Seq C2 exon
GTGGGGCTCCCAGAGGACACGGTGAAGCGCTGTGTGCAGCAGCTGGGGCTGGCGCTGGACTTCATGCACAGCAGGCAGCTGGTGCACCGTGACATCAAGCCCGAGAATGTGCTGCTGTTTGACCGTGAGTGCCGCCGTGTGAAGCTGGCTGACTTCGGCATGACGCGGCGCGTGGGCTGCCGTGTGAAGCGCGTGAGCGGCACTATACCGTACACAGCACCCGAGGTGTGCCAGGCTGGCCGCGCCGATGGCTTCGCGGTGGACACGGGCGTGGACGTGTGGGCCTTTGGCGTGCTCATCTTCTGTGTGCTCACTGGCAACTTCCCGTGGGAGGCTGCATCGGGTGCGGATGCCTTCTTCGAGGAGTTCGTGCGCTGGCAGCGGGGTCGCCTGCCGGGGCTGCCATCGCAGTGGCGCCGTTTTACCGAGCCTGCGCTGCGTATGTTCCAGCGGCTTCTGGCGCTAGAGCCTGAGCGGCGTGGGCCCGCCAAGGAGGTCTTTCGCTTCCTCAAGCACGAGCTCACATCCGAGCTGCGGCGGCGGCCTTCCCACCGCGCACGCAAGCCGCCTGGGGACCGCCTGCCAGGGTCCCTGCGCCTTGAGGCTCCCGGGCCACTCAAGCGCACTGTGCTCACCGAGAGTGGCAGCGGCTCGCGGCCTTCCCCACCCAGCGTAGGGCCCGTGGTACCCGTGCCAGTGCCAGTTCCAGTACCCGTGCCTGAGGCTGGTCTGGCTCCGCCTGCACCCCCGGGCAGGACCGACGGCCGCACGGACAAGAGTAAAGGGCAGGTGGTACTGGCCACGGCCATCGAGATCTGCGTCTGAGCCGCTGCAGCGCAGCTGCTGCGGGGAAGCCGCGCGCTCTAACCCGTACTGGGGACAAGGAGCAGTCTCTGCGCGGCAGTGGGAAGGAGTAGCGTAGACTAGGAGGCCCAGACACCCCGGTCGGTGGTGGGCTGGTGACATAGCTAGTAAATGACCATGCGTACGGCCGGCCTCAGCCTAGAGGAGCCGAGGCCCCTGACAAAGGCTGGGAGCTTGTGGGCCAGACTCTGAGCTCTGGAACCTGAACACTCCTGGCGCTTCATACCCCTTGGCAGATAACCCTACAGTATTCCATCCAAACCTGGGCACAGAAAGGGGGCTTTGGTGTCGGGCAGATATGGGCATGAGATCGATCCTTAGAAACTGGCAAAGGACAGGCACTGGGTTGATAACAGTGGTCTCCAGGAGGTCAGAGGAAGAGGCCAAGCCCTTTAAATGTAGCAAAAGTTGTGTGCAGGAACAGACCCGATTATCTAGTGATACCCCTCACTTCTTCCTGCTGATGGGAACTTTGAACCCAGGAGGGAGAGCTATTACTGCAGCCACGAGGCTTTTGGGAACAGAGCTCCAATGTGTGCCCCTCCTGGGAGTAAGGGAGCAGATGGCTGGGGAACAGGAGGCTCGGCACTCCTGTGTCCCCAGGGCAATGGAGTCCATGCACAGCCCAGCTGCTCCCTCCAGAGCACTCCACAAGCAGGGAAACAGTTGTGACAGCTACTCCTGGGTTTCTGTTGCCGTCACATGTCAGCCTGGGTTCTAGGCCAGTACCCTTTCAGGGGCAGAGCAGGTCACTGAAGTGAGGAGGGAGTGTGATGTGTGTCTAAGTGTCCAGACACCTCACCAGGCAGCTGCCAAGAGCCAGGCCTCTGTTTTAGCACACTCCTCAGGGAACCCCAGGAGGTACCTGCTGTTGGCTCCGGTTCTTAGGCAGCAAAGCAGGGATCCACCCTGCCCCGGCTCTCCTTTGGGACCCTACACAAGAGGCTTGAGGGACCCTTGCAATAACCTCAACACAGGCAGGCTGTGCCTTCTGCCTGGCGCCACCCAACTGGCCAGCCTGGGCTGCCTCTCCTAGGGTCCCTCCAAAAAGTTCCGGGTCATTCAAGGAGGTTCCATCTTGGGGCTGGCTGGCTAGCTAGCTACAAGGGGCACCAACCACCCCTCAGCCTGGAGCCCCCCACCTCTACACACCCCCTTACTCCCACCACAAAGGGCTATAGGTCTCCCTGCCCTGCCTGAGTCCAGTTTACAAACTGTGGTTGCTCCAGGGCCTGGTCCTACTCTCCTGGGGTGCCACCACTTCCCTAGTGGACACAGGGCCACATATGCCAGGTAAGTAGCAAACCCCTCCTCCTGCCAAGAGCCGAGTCTCAGAAGGCCCCCATCACTGCCCTGGCCCACCTGGGGCCATTAGGCCCTCCTTCCCAGCCGCTGCCTCTCCTCTTGCCTTAGGCCTCTCCACCCTGATCTGCAATAACAAGGAAGCGAGATTCCACGGTAGACATCCCGCATCCCACAAGCGCCCCTCTCTGTTGAGATCCTGTGTGGGAGGCTTCTCCCTTGTAGTATCTAGGATGGTAGTCCTCAGAAGAGACCTTAGGTACGTAGCCCAGCCCCATTGTTTAGAGGCAGCAACCAGCCTGACCTGGAACAGGACTCGGACTGGGTCAGCCTCTGCTCTTGCCACCGCTGGTACTGTCTCTGTCGGTTGGGTTGGGACCCTTTGCCCCTTAGGAGAGGTGTTGGTTACAGATGTTTACCTCAGTTTGAAGAAACAAAACTGTTGAAGAAACAAATAATAATAATAGCAAAAAATTAGTAACACGGTAGACATGGAGGCTTAGAAGACAAACCACAGAGGAAACCTCCCCCTTTACAAGTTTTCTGTGAAGTACAGTTTGTTCACGTACGCACACATATGTGTGCATCTCTGTCTCACCCCAGGGCAGGCCAAATCATCTATTGACACCTGTCCCAGCCTGTGTGTCCCTCACACTGCCCCCTGTCCTTTGGTGCTTCCCAGGGGCCCCTTTGAGCTGGCTTGTGGGGTATAGGAGAGCTCCCCGGATGGGAAGTGAGGCCTCGGGTTAGCTAGAGGTCTCCCACCAGGTTCTGTGAGCAGAGAGCCCTATGACTGTGATGTTCCCTGAGCCCACAGGACAGTCCTGGTGGCTGGCAACAGTGTCCAGTTCTGGGGCAGAGCCTGGGTTGTTCTCACGCAGTAGAGCCTCACACCCCTGTCTCGCCTCTCCTACCCCATGTGTTTGTAAATACTCTGGCTTCCTTTGGCCCTGAGGAGGTTTTTAAATGTGTTATTTACTTCTCTAACTATGACAATTGCTATAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042978-Sbk1:NM_145587:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.307
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(65.0=62.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAACAGCCTGTCGTCTA
R:
TCGGGTGCTGTGTACGGTATA
Band lengths:
355-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: